Cluster: ShaoY_2019_ERR3405922_bin.6_CGC31
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- CGC Family ID: CGCFAM_00419
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_109 | 127972 | 131376 | - | CBM4 | CBM4 | CBM4 | GH16_3 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_110 | 131373 | 133829 | - | GH3 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_111 | 133949 | 134794 | - | 3.A.1.1.13 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_112 | 134798 | 135760 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_113 | 135831 | 137213 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_114 | 137468 | 140167 | + | GH94 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_115 | 140196 | 142607 | + | GH94 |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_116 | 142745 | 143551 | - | HTH_AraC | HTH_AraC |
| STP | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_117 | 143767 | 144324 | + | TetR_N |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_118 | 144465 | 147515 | + | 9.B.74.1.3 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_109
Type: CAZyme
Location: 127972 - 131376 (-)
Type: CAZyme
Location: 127972 - 131376 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_110
Type: CAZyme
Location: 131373 - 133829 (-)
Type: CAZyme
Location: 131373 - 133829 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_111
Type: TC
Location: 133949 - 134794 (-)
Type: TC
Location: 133949 - 134794 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_112
Type: TC
Location: 134798 - 135760 (-)
Type: TC
Location: 134798 - 135760 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_113
Type:
Location: 135831 - 137213 (-)
Type:
Location: 135831 - 137213 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_114
Type: CAZyme
Location: 137468 - 140167 (+)
Type: CAZyme
Location: 137468 - 140167 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_115
Type: CAZyme
Location: 140196 - 142607 (+)
Type: CAZyme
Location: 140196 - 142607 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_116
Type: TF
Location: 142745 - 143551 (-)
Type: TF
Location: 142745 - 143551 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_117
Type: STP
Location: 143767 - 144324 (+)
Type: STP
Location: 143767 - 144324 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_118
Type: TC
Location: 144465 - 147515 (+)
Type: TC
Location: 144465 - 147515 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405922_bin.6_k141_19108_113 | vegan > omnivore | 1.21170 | 0.00141 |