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Cluster: ShaoY_2019_ERR3405922_bin.6_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_22 17876 19738 + GH13_9
pfam ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_23 19773 20261 - MazG
pfam ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_24 20258 21928 - PDDEXK_9 | AAA-ATPase_like
CAZyme ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_25 22020 23339 - GH32
pfam ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_26 23360 23662 - TOBE_2
TF ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_27 24172 24510 - HTH_3
TC ShaoY_2019_ERR3405922_bin.6_k141_4649 ShaoY_2019_ERR3405922_bin.6_k141_4649_28 24821 26041 + 2.A.55.3.2
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_22
Type: CAZyme
Location: 17876 - 19738 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_23
Type: pfam
Location: 19773 - 20261 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_24
Type: pfam
Location: 20258 - 21928 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_25
Type: CAZyme
Location: 22020 - 23339 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_26
Type: pfam
Location: 23360 - 23662 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_27
Type: TF
Location: 24172 - 24510 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4649_28
Type: TC
Location: 24821 - 26041 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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