Cluster: ShaoY_2019_ERR3405922_bin.6_CGC29
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_18 | 19303 | 20724 | - | 3.A.1.122.7 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_19 | 20681 | 22312 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_20 | 22309 | 22992 | - | 3.A.1.122.7 |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_21 | 23208 | 24380 | - | ELFV_dehydrog | malic | Malic_M |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_22 | 24795 | 26027 | + | Arginosuc_synth | Arginosuc_syn_C |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_23 | 26348 | 29350 | - | GH3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_24 | 29376 | 29891 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_19108 | ShaoY_2019_ERR3405922_bin.6_k141_19108_25 | 29875 | 31341 | - | GH43_35 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_18
Type: TC
Location: 19303 - 20724 (-)
Type: TC
Location: 19303 - 20724 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_19
Type:
Location: 20681 - 22312 (-)
Type:
Location: 20681 - 22312 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_20
Type: TC
Location: 22309 - 22992 (-)
Type: TC
Location: 22309 - 22992 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_21
Type: pfam
Location: 23208 - 24380 (-)
Type: pfam
Location: 23208 - 24380 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_22
Type: pfam
Location: 24795 - 26027 (+)
Type: pfam
Location: 24795 - 26027 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_23
Type: CAZyme
Location: 26348 - 29350 (-)
Type: CAZyme
Location: 26348 - 29350 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_24
Type:
Location: 29376 - 29891 (-)
Type:
Location: 29376 - 29891 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_19108_25
Type: CAZyme
Location: 29875 - 31341 (-)
Type: CAZyme
Location: 29875 - 31341 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405922_bin.6_k141_19108_21 | vegan > omnivore | 1.15093 | 0.00141 |
| ShaoY_2019_ERR3405922_bin.6_k141_19108_21 | vegan > vegetarian | 1.32203 | 0.01652 |