Cluster: ShaoY_2019_ERR3405922_bin.6_CGC21
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- CGC Family ID: CGCFAM_03894
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_44 | 41693 | 43099 | - | 2.A.25.1.3 |
| STP | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_45 | 43227 | 44720 | - | HATPase_c | HisKA |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_46 | 44717 | 45403 | - | Trans_reg_C |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_47 | 45748 | 46308 | + | 2.A.107.1.2 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_48 | 46491 | 47840 | + | 2.A.66.1.26 |
| STP | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_49 | 47878 | 48117 | - | PTS-HPr |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_50 | 48198 | 49262 | - | IF-2B |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_51 | 49670 | 50896 | - | GH25 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_44
Type: TC
Location: 41693 - 43099 (-)
Type: TC
Location: 41693 - 43099 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_45
Type: STP
Location: 43227 - 44720 (-)
Type: STP
Location: 43227 - 44720 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_46
Type: TF
Location: 44717 - 45403 (-)
Type: TF
Location: 44717 - 45403 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_47
Type: TC
Location: 45748 - 46308 (+)
Type: TC
Location: 45748 - 46308 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_48
Type: TC
Location: 46491 - 47840 (+)
Type: TC
Location: 46491 - 47840 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_49
Type: STP
Location: 47878 - 48117 (-)
Type: STP
Location: 47878 - 48117 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_50
Type: pfam
Location: 48198 - 49262 (-)
Type: pfam
Location: 48198 - 49262 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_51
Type: CAZyme
Location: 49670 - 50896 (-)
Type: CAZyme
Location: 49670 - 50896 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.