Cluster: ShaoY_2019_ERR3405922_bin.6_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_16 | 15329 | 16348 | + | GT2 |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_17 | 16409 | 17008 | + | Rubrerythrin | RUBY_RBDX |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_18 | 16993 | 17760 | - | HTH_DeoR |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_9238 | ShaoY_2019_ERR3405922_bin.6_k141_9238_19 | 17811 | 19724 | - | 4.A.2.1.4 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_16
Type: CAZyme
Location: 15329 - 16348 (+)
Type: CAZyme
Location: 15329 - 16348 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_17
Type: pfam
Location: 16409 - 17008 (+)
Type: pfam
Location: 16409 - 17008 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_18
Type: TF
Location: 16993 - 17760 (-)
Type: TF
Location: 16993 - 17760 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9238_19
Type: TC
Location: 17811 - 19724 (-)
Type: TC
Location: 17811 - 19724 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.