Cluster: ShaoY_2019_ERR3405922_bin.6_CGC2
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate: fructan
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- CGC Family ID: CGCFAM_00926
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4141 | ShaoY_2019_ERR3405922_bin.6_k141_4141_22 | 21169 | 21825 | + | 2.A.115.2.8 |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_4141 | ShaoY_2019_ERR3405922_bin.6_k141_4141_23 | 21888 | 22889 | + | LacI |
| STP | ShaoY_2019_ERR3405922_bin.6_k141_4141 | ShaoY_2019_ERR3405922_bin.6_k141_4141_24 | 23157 | 24404 | + | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4141 | ShaoY_2019_ERR3405922_bin.6_k141_4141_25 | 24512 | 25396 | + | 3.A.1.1.37 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4141 | ShaoY_2019_ERR3405922_bin.6_k141_4141_26 | 25422 | 26252 | + | 3.A.1.1.25 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_4141 | ShaoY_2019_ERR3405922_bin.6_k141_4141_27 | 26271 | 27755 | + | GH32 |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_4141 | ShaoY_2019_ERR3405922_bin.6_k141_4141_28 | 27769 | 29121 | + | GH91 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_4141 | ShaoY_2019_ERR3405922_bin.6_k141_4141_29 | 29296 | 29658 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_4141 | ShaoY_2019_ERR3405922_bin.6_k141_4141_30 | 29680 | 31020 | + | 2.A.66.1.33 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4141_22
Type: TC
Location: 21169 - 21825 (+)
Type: TC
Location: 21169 - 21825 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4141_23
Type: TF
Location: 21888 - 22889 (+)
Type: TF
Location: 21888 - 22889 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4141_24
Type: STP
Location: 23157 - 24404 (+)
Type: STP
Location: 23157 - 24404 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4141_25
Type: TC
Location: 24512 - 25396 (+)
Type: TC
Location: 24512 - 25396 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4141_26
Type: TC
Location: 25422 - 26252 (+)
Type: TC
Location: 25422 - 26252 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4141_27
Type: CAZyme
Location: 26271 - 27755 (+)
Type: CAZyme
Location: 26271 - 27755 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4141_28
Type: CAZyme
Location: 27769 - 29121 (+)
Type: CAZyme
Location: 27769 - 29121 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4141_29
Type:
Location: 29296 - 29658 (+)
Type:
Location: 29296 - 29658 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_4141_30
Type: TC
Location: 29680 - 31020 (+)
Type: TC
Location: 29680 - 31020 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.