Cluster: ShaoY_2019_ERR3405922_bin.6_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405922_bin.6_k141_9108 | ShaoY_2019_ERR3405922_bin.6_k141_9108_8 | 5235 | 6422 | + | 2.A.39.1.3 |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_9108 | ShaoY_2019_ERR3405922_bin.6_k141_9108_9 | 6431 | 7369 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_9108 | ShaoY_2019_ERR3405922_bin.6_k141_9108_10 | 7507 | 9252 | + | GH13_31 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_9108 | ShaoY_2019_ERR3405922_bin.6_k141_9108_11 | 9391 | 10914 | + | 2.A.35.2.1 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9108_8
Type: TC
Location: 5235 - 6422 (+)
Type: TC
Location: 5235 - 6422 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9108_9
Type: TF
Location: 6431 - 7369 (-)
Type: TF
Location: 6431 - 7369 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9108_10
Type: CAZyme
Location: 7507 - 9252 (+)
Type: CAZyme
Location: 7507 - 9252 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_9108_11
Type: TC
Location: 9391 - 10914 (+)
Type: TC
Location: 9391 - 10914 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.