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Cluster: ShaoY_2019_ERR3405922_bin.6_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405922_bin.6_k141_8368 ShaoY_2019_ERR3405922_bin.6_k141_8368_18 18598 19455 + 3.A.1.26.7
TC ShaoY_2019_ERR3405922_bin.6_k141_8368 ShaoY_2019_ERR3405922_bin.6_k141_8368_19 19440 20288 + 3.A.1.26.7
TC ShaoY_2019_ERR3405922_bin.6_k141_8368 ShaoY_2019_ERR3405922_bin.6_k141_8368_20 20319 21143 + 3.A.1.26.7
pfam ShaoY_2019_ERR3405922_bin.6_k141_8368 ShaoY_2019_ERR3405922_bin.6_k141_8368_21 21155 21931 + PseudoU_synth_1 | PseudoU_synth_1
sulfatase ShaoY_2019_ERR3405922_bin.6_k141_8368 ShaoY_2019_ERR3405922_bin.6_k141_8368_22 22139 22876 + S1_9
CAZyme ShaoY_2019_ERR3405922_bin.6_k141_8368 ShaoY_2019_ERR3405922_bin.6_k141_8368_23 22909 24024 + CE9
pfam ShaoY_2019_ERR3405922_bin.6_k141_8368 ShaoY_2019_ERR3405922_bin.6_k141_8368_24 24230 25066 + PRD | PRD | CAT_RBD
TC ShaoY_2019_ERR3405922_bin.6_k141_8368 ShaoY_2019_ERR3405922_bin.6_k141_8368_25 25114 25593 + 4.A.1.2.11
TC ShaoY_2019_ERR3405922_bin.6_k141_8368 ShaoY_2019_ERR3405922_bin.6_k141_8368_26 25697 27169 + 4.A.1.1.7
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_8368_18
Type: TC
Location: 18598 - 19455 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_8368_19
Type: TC
Location: 19440 - 20288 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_8368_20
Type: TC
Location: 20319 - 21143 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_8368_21
Type: pfam
Location: 21155 - 21931 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_8368_22
Type: sulfatase
Location: 22139 - 22876 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_8368_23
Type: CAZyme
Location: 22909 - 24024 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_8368_24
Type: pfam
Location: 24230 - 25066 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_8368_25
Type: TC
Location: 25114 - 25593 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_8368_26
Type: TC
Location: 25697 - 27169 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405922_bin.6_k141_8368_22 vegetarian > omnivore 1.76186 0.02258

🧭 Explore Read Mapping of CGC

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