Cluster: ShaoY_2019_ERR3405922_bin.6_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- CGC Family ID: CGCFAM_00100
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_49 | 54069 | 55121 | - | 2.A.20.1.7 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_50 | 55331 | 55627 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_51 | 55714 | 56133 | - | ATP-synt_DE | ATP-synt_DE_N |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_52 | 56165 | 57562 | - | 3.A.2.1.5 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_53 | 57596 | 58480 | - | 3.A.2.1.5 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_54 | 58485 | 59990 | - | 3.A.2.1.5 |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_55 | 60041 | 60577 | - | OSCP |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_56 | 60558 | 61058 | - | ATP-synt_B |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_57 | 61107 | 61328 | - | 3.A.2.1.5 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_58 | 61375 | 62034 | - | 3.A.2.1.5 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_59 | 62618 | 63364 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_60 | 63269 | 64369 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_5373 | ShaoY_2019_ERR3405922_bin.6_k141_5373_61 | 64607 | 66040 | + | CE4 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_49
Type: TC
Location: 54069 - 55121 (-)
Type: TC
Location: 54069 - 55121 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_50
Type:
Location: 55331 - 55627 (-)
Type:
Location: 55331 - 55627 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_51
Type: pfam
Location: 55714 - 56133 (-)
Type: pfam
Location: 55714 - 56133 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_52
Type: TC
Location: 56165 - 57562 (-)
Type: TC
Location: 56165 - 57562 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_53
Type: TC
Location: 57596 - 58480 (-)
Type: TC
Location: 57596 - 58480 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_54
Type: TC
Location: 58485 - 59990 (-)
Type: TC
Location: 58485 - 59990 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_55
Type: pfam
Location: 60041 - 60577 (-)
Type: pfam
Location: 60041 - 60577 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_56
Type: pfam
Location: 60558 - 61058 (-)
Type: pfam
Location: 60558 - 61058 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_57
Type: TC
Location: 61107 - 61328 (-)
Type: TC
Location: 61107 - 61328 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_58
Type: TC
Location: 61375 - 62034 (-)
Type: TC
Location: 61375 - 62034 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_59
Type:
Location: 62618 - 63364 (+)
Type:
Location: 62618 - 63364 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_60
Type:
Location: 63269 - 64369 (-)
Type:
Location: 63269 - 64369 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_5373_61
Type: CAZyme
Location: 64607 - 66040 (+)
Type: CAZyme
Location: 64607 - 66040 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.