Cluster: ShaoY_2019_ERR3405922_bin.6_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405922_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405922_bin.6_k141_680 | ShaoY_2019_ERR3405922_bin.6_k141_680_30 | 32565 | 33248 | - | 2.A.87.2.3 |
| pfam | ShaoY_2019_ERR3405922_bin.6_k141_680 | ShaoY_2019_ERR3405922_bin.6_k141_680_31 | 33323 | 34534 | - | Flavoprotein | DFP |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405922_bin.6_k141_680 | ShaoY_2019_ERR3405922_bin.6_k141_680_32 | 34737 | 35168 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405922_bin.6_k141_680 | ShaoY_2019_ERR3405922_bin.6_k141_680_33 | 35305 | 36777 | - | GH32 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_680 | ShaoY_2019_ERR3405922_bin.6_k141_680_34 | 36790 | 37779 | - | 3.A.1.2.13 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_680 | ShaoY_2019_ERR3405922_bin.6_k141_680_35 | 37781 | 39271 | - | 3.A.1.2.20 |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_680 | ShaoY_2019_ERR3405922_bin.6_k141_680_36 | 39357 | 40352 | - | 3.A.1.2.26 |
| TF | ShaoY_2019_ERR3405922_bin.6_k141_680 | ShaoY_2019_ERR3405922_bin.6_k141_680_37 | 40479 | 42470 | - | LacI |
| TC | ShaoY_2019_ERR3405922_bin.6_k141_680 | ShaoY_2019_ERR3405922_bin.6_k141_680_38 | 42642 | 44129 | - | 2.A.114.1.2 |
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_680_30
Type: TC
Location: 32565 - 33248 (-)
Type: TC
Location: 32565 - 33248 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_680_31
Type: pfam
Location: 33323 - 34534 (-)
Type: pfam
Location: 33323 - 34534 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_680_32
Type:
Location: 34737 - 35168 (+)
Type:
Location: 34737 - 35168 (+)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_680_33
Type: CAZyme
Location: 35305 - 36777 (-)
Type: CAZyme
Location: 35305 - 36777 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_680_34
Type: TC
Location: 36790 - 37779 (-)
Type: TC
Location: 36790 - 37779 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_680_35
Type: TC
Location: 37781 - 39271 (-)
Type: TC
Location: 37781 - 39271 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_680_36
Type: TC
Location: 39357 - 40352 (-)
Type: TC
Location: 39357 - 40352 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_680_37
Type: TF
Location: 40479 - 42470 (-)
Type: TF
Location: 40479 - 42470 (-)
Gene ID: ShaoY_2019_ERR3405922_bin.6_k141_680_38
Type: TC
Location: 42642 - 44129 (-)
Type: TC
Location: 42642 - 44129 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.