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Cluster: ShaoY_2019_ERR3405869_bin.2_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_6 4938 6677 + 3.A.1.135.9
TC ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_7 6658 8457 + 3.A.1.135.9
TF ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_8 8717 9460 + HTH_6
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_9 9609 11033 + GH1
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_10 11050 13170 + GH3
TF ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_11 13438 14451 + LacI
TC ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_12 14474 15421 + 3.A.1.1.29
TC ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_13 15436 16350 + 3.A.1.1.29
NULL(UNKNOWN) ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_14 16363 18003 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_15 18088 18714 + 9.B.28.1.3
pfam ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_16 18719 19663 + ROK
pfam ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_17 19970 20821 + PRD | PRD | CAT_RBD
TC ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_18 20824 22794 + 4.A.1.1.2
STP ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_19 22999 24276 + EPSP_synthase
TC ShaoY_2019_ERR3405869_bin.2_k141_6517 ShaoY_2019_ERR3405869_bin.2_k141_6517_20 24273 25571 + 3.A.6.1.1
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_6
Type: TC
Location: 4938 - 6677 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_7
Type: TC
Location: 6658 - 8457 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_8
Type: TF
Location: 8717 - 9460 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_9
Type: CAZyme
Location: 9609 - 11033 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_10
Type: CAZyme
Location: 11050 - 13170 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_11
Type: TF
Location: 13438 - 14451 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_12
Type: TC
Location: 14474 - 15421 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_13
Type: TC
Location: 15436 - 16350 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_14
Type:
Location: 16363 - 18003 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_15
Type: TC
Location: 18088 - 18714 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_16
Type: pfam
Location: 18719 - 19663 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_17
Type: pfam
Location: 19970 - 20821 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_18
Type: TC
Location: 20824 - 22794 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_19
Type: STP
Location: 22999 - 24276 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_6517_20
Type: TC
Location: 24273 - 25571 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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