Cluster: ShaoY_2019_ERR3405833_bin.12_CGC9
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405833_bin.12_k141_3672 | ShaoY_2019_ERR3405833_bin.12_k141_3672_270 | 260492 | 262162 | - | 3.A.1.106.11 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_3672 | ShaoY_2019_ERR3405833_bin.12_k141_3672_271 | 262162 | 263901 | - | 3.A.1.106.12 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_3672 | ShaoY_2019_ERR3405833_bin.12_k141_3672_272 | 264109 | 265551 | - | 1.I.1.1.3 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_3672 | ShaoY_2019_ERR3405833_bin.12_k141_3672_273 | 265700 | 266767 | - | ABC2_membrane_3 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_3672 | ShaoY_2019_ERR3405833_bin.12_k141_3672_274 | 266758 | 267852 | - | ABC2_membrane_3 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_3672 | ShaoY_2019_ERR3405833_bin.12_k141_3672_275 | 267865 | 268800 | - | 3.A.1.105.9 |
| TF | ShaoY_2019_ERR3405833_bin.12_k141_3672 | ShaoY_2019_ERR3405833_bin.12_k141_3672_276 | 268886 | 269527 | - | GerE |
| STP | ShaoY_2019_ERR3405833_bin.12_k141_3672 | ShaoY_2019_ERR3405833_bin.12_k141_3672_277 | 269529 | 270680 | - | HATPase_c |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_3672 | ShaoY_2019_ERR3405833_bin.12_k141_3672_278 | 270983 | 275926 | - | GH36 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3672_270
Type: TC
Location: 260492 - 262162 (-)
Type: TC
Location: 260492 - 262162 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3672_271
Type: TC
Location: 262162 - 263901 (-)
Type: TC
Location: 262162 - 263901 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3672_272
Type: TC
Location: 264109 - 265551 (-)
Type: TC
Location: 264109 - 265551 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3672_273
Type: pfam
Location: 265700 - 266767 (-)
Type: pfam
Location: 265700 - 266767 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3672_274
Type: pfam
Location: 266758 - 267852 (-)
Type: pfam
Location: 266758 - 267852 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3672_275
Type: TC
Location: 267865 - 268800 (-)
Type: TC
Location: 267865 - 268800 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3672_276
Type: TF
Location: 268886 - 269527 (-)
Type: TF
Location: 268886 - 269527 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3672_277
Type: STP
Location: 269529 - 270680 (-)
Type: STP
Location: 269529 - 270680 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3672_278
Type: CAZyme
Location: 270983 - 275926 (-)
Type: CAZyme
Location: 270983 - 275926 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.