Cluster: ShaoY_2019_ERR3405833_bin.12_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- CGC Family ID: CGCFAM_08152
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405833_bin.12_k141_3425 | ShaoY_2019_ERR3405833_bin.12_k141_3425_2 | 781 | 1497 | - | 1.E.43.3.3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405833_bin.12_k141_3425 | ShaoY_2019_ERR3405833_bin.12_k141_3425_3 | 1992 | 2459 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_3425 | ShaoY_2019_ERR3405833_bin.12_k141_3425_4 | 2579 | 5110 | - | 9.B.111.1.3 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_3425 | ShaoY_2019_ERR3405833_bin.12_k141_3425_5 | 5560 | 6819 | - | 2.A.49.9.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405833_bin.12_k141_3425 | ShaoY_2019_ERR3405833_bin.12_k141_3425_6 | 7142 | 7486 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_3425 | ShaoY_2019_ERR3405833_bin.12_k141_3425_7 | 7860 | 8099 | + | Ribosomal_TL5_C |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_3425 | ShaoY_2019_ERR3405833_bin.12_k141_3425_8 | 8365 | 9531 | + | 2.A.23.2.7 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_3425 | ShaoY_2019_ERR3405833_bin.12_k141_3425_9 | 9639 | 10037 | - | GH20 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3425_2
Type: TC
Location: 781 - 1497 (-)
Type: TC
Location: 781 - 1497 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3425_3
Type:
Location: 1992 - 2459 (-)
Type:
Location: 1992 - 2459 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3425_4
Type: TC
Location: 2579 - 5110 (-)
Type: TC
Location: 2579 - 5110 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3425_5
Type: TC
Location: 5560 - 6819 (-)
Type: TC
Location: 5560 - 6819 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3425_6
Type:
Location: 7142 - 7486 (-)
Type:
Location: 7142 - 7486 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3425_7
Type: pfam
Location: 7860 - 8099 (+)
Type: pfam
Location: 7860 - 8099 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3425_8
Type: TC
Location: 8365 - 9531 (+)
Type: TC
Location: 8365 - 9531 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_3425_9
Type: CAZyme
Location: 9639 - 10037 (-)
Type: CAZyme
Location: 9639 - 10037 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.