Cluster: ShaoY_2019_ERR3405833_bin.12_CGC43
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- CGC Family ID: CGCFAM_08157
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_13 | 21291 | 22886 | - | 3.A.1.121.4 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_14 | 23078 | 23548 | + | tRNA_edit |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_15 | 23645 | 24292 | - | 1.C.113.1.2 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_16 | 24507 | 25091 | + | DUF1836 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_17 | 25092 | 26792 | + | ABC_ATPase | ABC_N | MRB1590_C |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_18 | 26871 | 28214 | - | 9.A.5.1.1 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_19 | 28437 | 29297 | + | Hydrolase | S6PP | Hydrolase_3 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_20 | 29406 | 30248 | + | 2.A.115.1.5 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_21 | 30630 | 32042 | + | GH1 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_13479 | ShaoY_2019_ERR3405833_bin.12_k141_13479_22 | 32454 | 33530 | + | 2.A.86.1.8 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_13
Type: TC
Location: 21291 - 22886 (-)
Type: TC
Location: 21291 - 22886 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_14
Type: pfam
Location: 23078 - 23548 (+)
Type: pfam
Location: 23078 - 23548 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_15
Type: TC
Location: 23645 - 24292 (-)
Type: TC
Location: 23645 - 24292 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_16
Type: pfam
Location: 24507 - 25091 (+)
Type: pfam
Location: 24507 - 25091 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_17
Type: pfam
Location: 25092 - 26792 (+)
Type: pfam
Location: 25092 - 26792 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_18
Type: TC
Location: 26871 - 28214 (-)
Type: TC
Location: 26871 - 28214 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_19
Type: pfam
Location: 28437 - 29297 (+)
Type: pfam
Location: 28437 - 29297 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_20
Type: TC
Location: 29406 - 30248 (+)
Type: TC
Location: 29406 - 30248 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_21
Type: CAZyme
Location: 30630 - 32042 (+)
Type: CAZyme
Location: 30630 - 32042 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_13479_22
Type: TC
Location: 32454 - 33530 (+)
Type: TC
Location: 32454 - 33530 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.