Cluster: ShaoY_2019_ERR3405833_bin.12_CGC41
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate: host glycan/beta-glucan
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- CGC Family ID: CGCFAM_00012
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_11353 | ShaoY_2019_ERR3405833_bin.12_k141_11353_5 | 2797 | 4194 | + | GH1 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_11353 | ShaoY_2019_ERR3405833_bin.12_k141_11353_6 | 4299 | 4580 | - | DUF1294 |
| TF | ShaoY_2019_ERR3405833_bin.12_k141_11353 | ShaoY_2019_ERR3405833_bin.12_k141_11353_7 | 5561 | 6364 | + | HTH_6 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_11353 | ShaoY_2019_ERR3405833_bin.12_k141_11353_8 | 6482 | 7876 | + | GH1 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_11353 | ShaoY_2019_ERR3405833_bin.12_k141_11353_9 | 7892 | 10348 | + | GH2 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_11353 | ShaoY_2019_ERR3405833_bin.12_k141_11353_10 | 10483 | 11766 | + | 4.A.3.2.2 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_11353 | ShaoY_2019_ERR3405833_bin.12_k141_11353_11 | 11947 | 13650 | + | GH3 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_11353_5
Type: CAZyme
Location: 2797 - 4194 (+)
Type: CAZyme
Location: 2797 - 4194 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_11353_6
Type: pfam
Location: 4299 - 4580 (-)
Type: pfam
Location: 4299 - 4580 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_11353_7
Type: TF
Location: 5561 - 6364 (+)
Type: TF
Location: 5561 - 6364 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_11353_8
Type: CAZyme
Location: 6482 - 7876 (+)
Type: CAZyme
Location: 6482 - 7876 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_11353_9
Type: CAZyme
Location: 7892 - 10348 (+)
Type: CAZyme
Location: 7892 - 10348 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_11353_10
Type: TC
Location: 10483 - 11766 (+)
Type: TC
Location: 10483 - 11766 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_11353_11
Type: CAZyme
Location: 11947 - 13650 (+)
Type: CAZyme
Location: 11947 - 13650 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.