Cluster: ShaoY_2019_ERR3405833_bin.12_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_2725 | ShaoY_2019_ERR3405833_bin.12_k141_2725_2 | 218 | 1654 | - | GH1 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_2725 | ShaoY_2019_ERR3405833_bin.12_k141_2725_3 | 1647 | 1994 | - | PTS_IIA |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_2725 | ShaoY_2019_ERR3405833_bin.12_k141_2725_4 | 1987 | 3237 | - | 4.A.3.2.3 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_2725 | ShaoY_2019_ERR3405833_bin.12_k141_2725_5 | 3293 | 3604 | - | 4.A.3.2.6 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2725_2
Type: CAZyme
Location: 218 - 1654 (-)
Type: CAZyme
Location: 218 - 1654 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2725_3
Type: pfam
Location: 1647 - 1994 (-)
Type: pfam
Location: 1647 - 1994 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2725_4
Type: TC
Location: 1987 - 3237 (-)
Type: TC
Location: 1987 - 3237 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2725_5
Type: TC
Location: 3293 - 3604 (-)
Type: TC
Location: 3293 - 3604 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.