Cluster: ShaoY_2019_ERR3405833_bin.12_CGC38
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- CGC Family ID: CGCFAM_08158
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_111 | 117245 | 118024 | - | 2.A.5.5.2 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_112 | 118254 | 119030 | - | Ubie_methyltran | TehB | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_113 | 119100 | 119687 | - | His_Phos_1 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_114 | 119864 | 122302 | - | 2.A.16.2.2 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_115 | 122378 | 122833 | - | Thioredoxin | Thioredoxin_2 | DUF6568 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_116 | 122889 | 127538 | - | CBM32 | GH84 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_117 | 128013 | 133262 | - | CBM32 | GH31_18 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_118 | 133399 | 134712 | - | GatZ_KbaZ-like |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_119 | 135210 | 139505 | + | GH2 |
| TF | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_120 | 139565 | 139921 | - | MerR |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10956 | ShaoY_2019_ERR3405833_bin.12_k141_10956_121 | 140014 | 141360 | - | 2.A.66.1.33 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_111
Type: TC
Location: 117245 - 118024 (-)
Type: TC
Location: 117245 - 118024 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_112
Type: pfam
Location: 118254 - 119030 (-)
Type: pfam
Location: 118254 - 119030 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_113
Type: pfam
Location: 119100 - 119687 (-)
Type: pfam
Location: 119100 - 119687 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_114
Type: TC
Location: 119864 - 122302 (-)
Type: TC
Location: 119864 - 122302 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_115
Type: pfam
Location: 122378 - 122833 (-)
Type: pfam
Location: 122378 - 122833 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_116
Type: CAZyme
Location: 122889 - 127538 (-)
Type: CAZyme
Location: 122889 - 127538 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_117
Type: CAZyme
Location: 128013 - 133262 (-)
Type: CAZyme
Location: 128013 - 133262 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_118
Type: pfam
Location: 133399 - 134712 (-)
Type: pfam
Location: 133399 - 134712 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_119
Type: CAZyme
Location: 135210 - 139505 (+)
Type: CAZyme
Location: 135210 - 139505 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_120
Type: TF
Location: 139565 - 139921 (-)
Type: TF
Location: 139565 - 139921 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10956_121
Type: TC
Location: 140014 - 141360 (-)
Type: TC
Location: 140014 - 141360 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.