Cluster: ShaoY_2019_ERR3405833_bin.12_CGC35
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10485 | ShaoY_2019_ERR3405833_bin.12_k141_10485_64 | 64388 | 65215 | - | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10485 | ShaoY_2019_ERR3405833_bin.12_k141_10485_65 | 65205 | 66020 | - | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10485 | ShaoY_2019_ERR3405833_bin.12_k141_10485_66 | 66043 | 66519 | - | 4.A.6.1.4 |
| TF | ShaoY_2019_ERR3405833_bin.12_k141_10485 | ShaoY_2019_ERR3405833_bin.12_k141_10485_67 | 66869 | 68035 | + | HTH_AraC | HTH_AraC |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_10485 | ShaoY_2019_ERR3405833_bin.12_k141_10485_68 | 68159 | 68437 | - | YajC |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10485 | ShaoY_2019_ERR3405833_bin.12_k141_10485_69 | 68440 | 68871 | - | 4.A.6.1.14 |
| STP | ShaoY_2019_ERR3405833_bin.12_k141_10485 | ShaoY_2019_ERR3405833_bin.12_k141_10485_70 | 68918 | 70096 | - | SIS | SIS |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_10485 | ShaoY_2019_ERR3405833_bin.12_k141_10485_71 | 70268 | 71407 | + | CE9 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10485_64
Type: TC
Location: 64388 - 65215 (-)
Type: TC
Location: 64388 - 65215 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10485_65
Type: TC
Location: 65205 - 66020 (-)
Type: TC
Location: 65205 - 66020 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10485_66
Type: TC
Location: 66043 - 66519 (-)
Type: TC
Location: 66043 - 66519 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10485_67
Type: TF
Location: 66869 - 68035 (+)
Type: TF
Location: 66869 - 68035 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10485_68
Type: pfam
Location: 68159 - 68437 (-)
Type: pfam
Location: 68159 - 68437 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10485_69
Type: TC
Location: 68440 - 68871 (-)
Type: TC
Location: 68440 - 68871 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10485_70
Type: STP
Location: 68918 - 70096 (-)
Type: STP
Location: 68918 - 70096 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10485_71
Type: CAZyme
Location: 70268 - 71407 (+)
Type: CAZyme
Location: 70268 - 71407 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.