Cluster: ShaoY_2019_ERR3405833_bin.12_CGC30
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_80 | 78983 | 79756 | + | 1.A.16.3.3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_81 | 80023 | 80172 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_82 | 80243 | 80791 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_83 | 80955 | 82010 | + | 3.A.1.11.8 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_84 | 82199 | 82768 | + | DUF3867 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_85 | 82880 | 83740 | + | 9.B.2.1.6 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_86 | 83824 | 85380 | + | 3.A.1.121.4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_87 | 85714 | 86658 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_88 | 87199 | 88488 | + | 2.A.26.1.5 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_89 | 88817 | 89335 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_90 | 89684 | 95629 | + | CBM51 | GH2 | GH2 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_10274 | ShaoY_2019_ERR3405833_bin.12_k141_10274_91 | 95968 | 97203 | + | 2.A.39.1.1 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_80
Type: TC
Location: 78983 - 79756 (+)
Type: TC
Location: 78983 - 79756 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_81
Type:
Location: 80023 - 80172 (+)
Type:
Location: 80023 - 80172 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_82
Type:
Location: 80243 - 80791 (+)
Type:
Location: 80243 - 80791 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_83
Type: TC
Location: 80955 - 82010 (+)
Type: TC
Location: 80955 - 82010 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_84
Type: pfam
Location: 82199 - 82768 (+)
Type: pfam
Location: 82199 - 82768 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_85
Type: TC
Location: 82880 - 83740 (+)
Type: TC
Location: 82880 - 83740 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_86
Type: TC
Location: 83824 - 85380 (+)
Type: TC
Location: 83824 - 85380 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_87
Type:
Location: 85714 - 86658 (+)
Type:
Location: 85714 - 86658 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_88
Type: TC
Location: 87199 - 88488 (+)
Type: TC
Location: 87199 - 88488 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_89
Type:
Location: 88817 - 89335 (-)
Type:
Location: 88817 - 89335 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_90
Type: CAZyme
Location: 89684 - 95629 (+)
Type: CAZyme
Location: 89684 - 95629 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_10274_91
Type: TC
Location: 95968 - 97203 (+)
Type: TC
Location: 95968 - 97203 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.