Cluster: ShaoY_2019_ERR3405833_bin.12_CGC22
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- CGC Family ID: CGCFAM_02957
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_26 | 30394 | 31476 | - | 3.A.1.1.26 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_27 | 31489 | 32385 | - | 3.A.1.1.26 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_28 | 32388 | 34475 | - | 3.A.1.1.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_29 | 34468 | 34971 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_30 | 35035 | 36330 | - | SBP_bac_1 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_31 | 36391 | 38766 | - | GT35 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_32 | 38784 | 40256 | - | GH77 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_33 | 40672 | 42621 | + | GH133 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_34 | 42734 | 44626 | - | GH13_14 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_35 | 44646 | 46796 | - | GH31_1 |
| TF | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_36 | 47077 | 48309 | + | HTH_3 |
| peptidase | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_37 | 48551 | 50350 | - | M38.UNW |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_9051 | ShaoY_2019_ERR3405833_bin.12_k141_9051_38 | 50457 | 51788 | - | 2.A.66.1.33 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_26
Type: TC
Location: 30394 - 31476 (-)
Type: TC
Location: 30394 - 31476 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_27
Type: TC
Location: 31489 - 32385 (-)
Type: TC
Location: 31489 - 32385 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_28
Type: TC
Location: 32388 - 34475 (-)
Type: TC
Location: 32388 - 34475 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_29
Type:
Location: 34468 - 34971 (-)
Type:
Location: 34468 - 34971 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_30
Type: STP
Location: 35035 - 36330 (-)
Type: STP
Location: 35035 - 36330 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_31
Type: CAZyme
Location: 36391 - 38766 (-)
Type: CAZyme
Location: 36391 - 38766 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_32
Type: CAZyme
Location: 38784 - 40256 (-)
Type: CAZyme
Location: 38784 - 40256 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_33
Type: CAZyme
Location: 40672 - 42621 (+)
Type: CAZyme
Location: 40672 - 42621 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_34
Type: CAZyme
Location: 42734 - 44626 (-)
Type: CAZyme
Location: 42734 - 44626 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_35
Type: CAZyme
Location: 44646 - 46796 (-)
Type: CAZyme
Location: 44646 - 46796 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_36
Type: TF
Location: 47077 - 48309 (+)
Type: TF
Location: 47077 - 48309 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_37
Type: peptidase
Location: 48551 - 50350 (-)
Type: peptidase
Location: 48551 - 50350 (-)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_9051_38
Type: TC
Location: 50457 - 51788 (-)
Type: TC
Location: 50457 - 51788 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.