Cluster: ShaoY_2019_ERR3405833_bin.12_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405833_bin.12
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_20 | 26671 | 27348 | + | 8.A.3.2.3 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_21 | 27360 | 28019 | + | 8.A.3.2.1 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_22 | 28032 | 28796 | + | CpsB_CapC |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_23 | 28829 | 30712 | + | 9.B.18.2.1 |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_24 | 30726 | 31322 | + | 9.B.18.1.1 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_25 | 31351 | 32223 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_26 | 32225 | 33355 | + | GT4 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_27 | 33352 | 33957 | + | Hexapep | Hexapep_2 | Hexapep_2 |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_28 | 33944 | 35074 | + | GT4 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_29 | 35046 | 36140 | + | PS_pyruv_trans |
| CAZyme | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_30 | 36153 | 37259 | + | GT4 |
| pfam | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_31 | 37272 | 38705 | + | O-ag_pol_Wzy |
| TC | ShaoY_2019_ERR3405833_bin.12_k141_2228 | ShaoY_2019_ERR3405833_bin.12_k141_2228_32 | 38713 | 40209 | + | 2.A.66.2.23 |
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_20
Type: TC
Location: 26671 - 27348 (+)
Type: TC
Location: 26671 - 27348 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_21
Type: TC
Location: 27360 - 28019 (+)
Type: TC
Location: 27360 - 28019 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_22
Type: pfam
Location: 28032 - 28796 (+)
Type: pfam
Location: 28032 - 28796 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_23
Type: TC
Location: 28829 - 30712 (+)
Type: TC
Location: 28829 - 30712 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_24
Type: TC
Location: 30726 - 31322 (+)
Type: TC
Location: 30726 - 31322 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_25
Type: pfam
Location: 31351 - 32223 (+)
Type: pfam
Location: 31351 - 32223 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_26
Type: CAZyme
Location: 32225 - 33355 (+)
Type: CAZyme
Location: 32225 - 33355 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_27
Type: pfam
Location: 33352 - 33957 (+)
Type: pfam
Location: 33352 - 33957 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_28
Type: CAZyme
Location: 33944 - 35074 (+)
Type: CAZyme
Location: 33944 - 35074 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_29
Type: pfam
Location: 35046 - 36140 (+)
Type: pfam
Location: 35046 - 36140 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_30
Type: CAZyme
Location: 36153 - 37259 (+)
Type: CAZyme
Location: 36153 - 37259 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_31
Type: pfam
Location: 37272 - 38705 (+)
Type: pfam
Location: 37272 - 38705 (+)
Gene ID: ShaoY_2019_ERR3405833_bin.12_k141_2228_32
Type: TC
Location: 38713 - 40209 (+)
Type: TC
Location: 38713 - 40209 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.