Cluster: ShaoY_2019_ERR3405831_bin.2_CGC75
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_2 | 2078 | 2971 | - | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_3 | 2971 | 3912 | - | 3.A.1.1.10 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_4 | 4149 | 5723 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_5 | 5778 | 6641 | - | AP_endonuc_2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_6 | 6655 | 8895 | - | GH2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_7 | 8912 | 11443 | - | CBM67 | GH78 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_8 | 11468 | 12958 | - | MFS_2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_9 | 12984 | 14300 | - | GH1 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_2
Type: TC
Location: 2078 - 2971 (-)
Type: TC
Location: 2078 - 2971 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_3
Type: TC
Location: 2971 - 3912 (-)
Type: TC
Location: 2971 - 3912 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_4
Type:
Location: 4149 - 5723 (-)
Type:
Location: 4149 - 5723 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_5
Type: pfam
Location: 5778 - 6641 (-)
Type: pfam
Location: 5778 - 6641 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_6
Type: CAZyme
Location: 6655 - 8895 (-)
Type: CAZyme
Location: 6655 - 8895 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_7
Type: CAZyme
Location: 8912 - 11443 (-)
Type: CAZyme
Location: 8912 - 11443 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_8
Type: pfam
Location: 11468 - 12958 (-)
Type: pfam
Location: 11468 - 12958 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_9
Type: CAZyme
Location: 12984 - 14300 (-)
Type: CAZyme
Location: 12984 - 14300 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.