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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_2 205 6366 + CBM67 | GH78
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_3 6488 13510 + CBM67 | GH78
peptidase ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_4 13624 15423 + C40.UPW
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_5 15708 17546 - 8.A.59.2.1
TF ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_6 17543 19093 - HTH_AraC | HTH_AraC
TF ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_7 19175 20626 - HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_8 20929 22431 + 3.A.1.2.20
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_9 22453 23454 + 3.A.1.2.9
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_10 23457 24470 + 3.A.1.2.1
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_11 24567 25745 + 3.A.1.2.9
pfam ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_12 25974 26285 + rhaM
pfam ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_13 26438 27649 - Peripla_BP_4
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_14 27807 29069 - 3.A.1.2.8
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_15 29069 30073 - 3.A.1.2.9
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_16 30077 31585 - 3.A.1.2.20
TF ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_17 31824 32678 + HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_18 33594 34511 + 8.A.5.1.7
pfam ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_19 34560 35969 - Pyridoxal_deC
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_20 36162 37589 - GH29
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_21 37800 39230 - CE20
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_22 39242 40885 - NULL(UNKNOWN)
[View Structural Homologs]
TF ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_23 40889 41644 - HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_24 41650 43470 - 8.A.59.2.1
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_25 43896 44852 + 3.A.1.1.10
TC ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_26 44902 45795 + 3.A.1.1.10
STP ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_27 45841 47568 + SBP_bac_1
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_28 47759 50368 + CBM67 | GH78
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_29 50459 53152 + GH106
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3002 ShaoY_2019_ERR3405831_bin.2_k141_3002_30 53182 55353 + GH42
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_2
Type: CAZyme
Location: 205 - 6366 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_3
Type: CAZyme
Location: 6488 - 13510 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_4
Type: peptidase
Location: 13624 - 15423 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_5
Type: TC
Location: 15708 - 17546 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_6
Type: TF
Location: 17543 - 19093 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_7
Type: TF
Location: 19175 - 20626 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_8
Type: TC
Location: 20929 - 22431 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_9
Type: TC
Location: 22453 - 23454 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_10
Type: TC
Location: 23457 - 24470 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_11
Type: TC
Location: 24567 - 25745 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_12
Type: pfam
Location: 25974 - 26285 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_13
Type: pfam
Location: 26438 - 27649 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_14
Type: TC
Location: 27807 - 29069 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_15
Type: TC
Location: 29069 - 30073 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_16
Type: TC
Location: 30077 - 31585 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_17
Type: TF
Location: 31824 - 32678 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_18
Type: TC
Location: 33594 - 34511 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_19
Type: pfam
Location: 34560 - 35969 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_20
Type: CAZyme
Location: 36162 - 37589 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_21
Type: CAZyme
Location: 37800 - 39230 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_22
Type:
Location: 39242 - 40885 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_23
Type: TF
Location: 40889 - 41644 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_24
Type: TC
Location: 41650 - 43470 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_25
Type: TC
Location: 43896 - 44852 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_26
Type: TC
Location: 44902 - 45795 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_27
Type: STP
Location: 45841 - 47568 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_28
Type: CAZyme
Location: 47759 - 50368 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_29
Type: CAZyme
Location: 50459 - 53152 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3002_30
Type: CAZyme
Location: 53182 - 55353 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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