Cluster: ShaoY_2019_ERR3405831_bin.2_CGC40
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_01847
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_129 | 174793 | 175788 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_130 | 175801 | 176748 | + | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_131 | 176748 | 178043 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_132 | 178073 | 179092 | + | Acyl_transf_3 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_133 | 179109 | 180059 | + | GT2 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_134 | 180078 | 181340 | + | Glycos_transf_1 | Glyco_transf_4 | Glyco_trans_1_4 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_135 | 181337 | 182797 | + | 2.A.66.2.16 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_136 | 182790 | 183503 | + | CpsB_CapC |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_137 | 183515 | 184450 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_138 | 184461 | 185858 | + | 8.A.3.1.2 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_139 | 185881 | 187323 | + | 8.A.3.1.2 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_129
Type: CAZyme
Location: 174793 - 175788 (+)
Type: CAZyme
Location: 174793 - 175788 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_130
Type: CAZyme
Location: 175801 - 176748 (+)
Type: CAZyme
Location: 175801 - 176748 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_131
Type:
Location: 176748 - 178043 (+)
Type:
Location: 176748 - 178043 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_132
Type: pfam
Location: 178073 - 179092 (+)
Type: pfam
Location: 178073 - 179092 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_133
Type: CAZyme
Location: 179109 - 180059 (+)
Type: CAZyme
Location: 179109 - 180059 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_134
Type: pfam
Location: 180078 - 181340 (+)
Type: pfam
Location: 180078 - 181340 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_135
Type: TC
Location: 181337 - 182797 (+)
Type: TC
Location: 181337 - 182797 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_136
Type: pfam
Location: 182790 - 183503 (+)
Type: pfam
Location: 182790 - 183503 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_137
Type:
Location: 183515 - 184450 (+)
Type:
Location: 183515 - 184450 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_138
Type: TC
Location: 184461 - 185858 (+)
Type: TC
Location: 184461 - 185858 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_139
Type: TC
Location: 185881 - 187323 (+)
Type: TC
Location: 185881 - 187323 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.