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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_21 24238 25089 - 3.A.1.148.4
TF ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_22 25198 25980 + MerR
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_23 26333 28225 + 4.A.1.2.2
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_24 28218 29516 + GH140
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_25 29509 30915 + GH1
pfam ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_26 31549 32064 + Acetyltransf_1 | Acetyltransf_7
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_27 32294 34645 + GH3
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_28 34649 35737 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_29 35751 37196 + GH29
TF ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_30 37434 38993 + HTH_AraC | HTH_AraC
STP ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_31 39077 40873 + HATPase_c | dCache_1
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_32 41151 42077 + 3.A.1.1.29
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_33 42090 43076 + 3.A.1.1.29
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_34 43139 44911 + 3.A.1.1.29
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_35 45062 47155 + GH52
pfam ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_36 47161 48324 + Fe-ADH | Fe-ADH_2 | ADH_Fe_C
pfam ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_37 48364 49389 + URO-D
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_38 49638 51374 + 3.A.1.5.20
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_39 51508 52503 + 3.A.1.5.20
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_40 52493 53353 + 3.A.1.5.22
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_41 53363 54310 + 3.A.1.5.35
TC ShaoY_2019_ERR3405831_bin.2_k141_1077 ShaoY_2019_ERR3405831_bin.2_k141_1077_42 54300 54923 + 3.A.1.5.3
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_21
Type: TC
Location: 24238 - 25089 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_22
Type: TF
Location: 25198 - 25980 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_23
Type: TC
Location: 26333 - 28225 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_24
Type: CAZyme
Location: 28218 - 29516 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_25
Type: CAZyme
Location: 29509 - 30915 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_26
Type: pfam
Location: 31549 - 32064 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_27
Type: CAZyme
Location: 32294 - 34645 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_28
Type:
Location: 34649 - 35737 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_29
Type: CAZyme
Location: 35751 - 37196 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_30
Type: TF
Location: 37434 - 38993 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_31
Type: STP
Location: 39077 - 40873 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_32
Type: TC
Location: 41151 - 42077 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_33
Type: TC
Location: 42090 - 43076 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_34
Type: TC
Location: 43139 - 44911 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_35
Type: CAZyme
Location: 45062 - 47155 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_36
Type: pfam
Location: 47161 - 48324 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_37
Type: pfam
Location: 48364 - 49389 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_38
Type: TC
Location: 49638 - 51374 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_39
Type: TC
Location: 51508 - 52503 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_40
Type: TC
Location: 52493 - 53353 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_41
Type: TC
Location: 53363 - 54310 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1077_42
Type: TC
Location: 54300 - 54923 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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