Cluster: ShaoY_2019_ERR3405828_bin.1_CGC9
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405828_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2736 | ShaoY_2019_ERR3405828_bin.1_k141_2736_84 | 88042 | 89937 | - | 4.A.1.2.12 |
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_2736 | ShaoY_2019_ERR3405828_bin.1_k141_2736_85 | 90132 | 91589 | + | GH32 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2736 | ShaoY_2019_ERR3405828_bin.1_k141_2736_86 | 91620 | 92975 | - | 2.A.66.1.1 |
| sulfatase | ShaoY_2019_ERR3405828_bin.1_k141_2736 | ShaoY_2019_ERR3405828_bin.1_k141_2736_87 | 93032 | 94861 | - | S1_97 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2736 | ShaoY_2019_ERR3405828_bin.1_k141_2736_88 | 94914 | 96245 | - | 1.A.26.1.3 |
| pfam | ShaoY_2019_ERR3405828_bin.1_k141_2736 | ShaoY_2019_ERR3405828_bin.1_k141_2736_89 | 96363 | 96857 | + | Cupin_5 |
| pfam | ShaoY_2019_ERR3405828_bin.1_k141_2736 | ShaoY_2019_ERR3405828_bin.1_k141_2736_90 | 96900 | 98072 | - | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2736 | ShaoY_2019_ERR3405828_bin.1_k141_2736_91 | 98162 | 99997 | - | 1.A.33.1.4 |
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2736_84
Type: TC
Location: 88042 - 89937 (-)
Type: TC
Location: 88042 - 89937 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2736_85
Type: CAZyme
Location: 90132 - 91589 (+)
Type: CAZyme
Location: 90132 - 91589 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2736_86
Type: TC
Location: 91620 - 92975 (-)
Type: TC
Location: 91620 - 92975 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2736_87
Type: sulfatase
Location: 93032 - 94861 (-)
Type: sulfatase
Location: 93032 - 94861 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2736_88
Type: TC
Location: 94914 - 96245 (-)
Type: TC
Location: 94914 - 96245 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2736_89
Type: pfam
Location: 96363 - 96857 (+)
Type: pfam
Location: 96363 - 96857 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2736_90
Type: pfam
Location: 96900 - 98072 (-)
Type: pfam
Location: 96900 - 98072 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2736_91
Type: TC
Location: 98162 - 99997 (-)
Type: TC
Location: 98162 - 99997 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Granulicatella
Species
Granulicatella sp001058355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.