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Cluster: ShaoY_2019_ERR3405828_bin.1_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405828_bin.1_k141_2216 ShaoY_2019_ERR3405828_bin.1_k141_2216_32 32111 34768 - 3.A.3.4.1
pfam ShaoY_2019_ERR3405828_bin.1_k141_2216 ShaoY_2019_ERR3405828_bin.1_k141_2216_33 35216 35854 + LPAM_1 | DUF6287
CAZyme ShaoY_2019_ERR3405828_bin.1_k141_2216 ShaoY_2019_ERR3405828_bin.1_k141_2216_34 35937 38150 - GH31_15
TC ShaoY_2019_ERR3405828_bin.1_k141_2216 ShaoY_2019_ERR3405828_bin.1_k141_2216_35 38137 38790 - 9.B.28.1.3
STP ShaoY_2019_ERR3405828_bin.1_k141_2216 ShaoY_2019_ERR3405828_bin.1_k141_2216_36 38904 40466 - SBP_bac_1
TC ShaoY_2019_ERR3405828_bin.1_k141_2216 ShaoY_2019_ERR3405828_bin.1_k141_2216_37 40477 41373 - 3.A.1.1.10
TC ShaoY_2019_ERR3405828_bin.1_k141_2216 ShaoY_2019_ERR3405828_bin.1_k141_2216_38 41392 42309 - 3.A.1.1.10
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2216_32
Type: TC
Location: 32111 - 34768 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2216_33
Type: pfam
Location: 35216 - 35854 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2216_34
Type: CAZyme
Location: 35937 - 38150 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2216_35
Type: TC
Location: 38137 - 38790 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2216_36
Type: STP
Location: 38904 - 40466 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2216_37
Type: TC
Location: 40477 - 41373 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2216_38
Type: TC
Location: 41392 - 42309 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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