Cluster: ShaoY_2019_ERR3405828_bin.1_CGC4
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405828_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_2 | 2718 | 4181 | - | 2.A.40.7.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_3 | 4407 | 5201 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_4 | 5316 | 6170 | - | 3.A.1.24.2 |
| pfam | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_5 | 6677 | 7627 | - | Rotamase | Rotamase_2 | Rotamase_3 |
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_6 | 7808 | 8599 | - | CBM50 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_7 | 8743 | 8946 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_8 | 8994 | 10607 | - | 3.A.1.112.9 |
| TF | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_9 | 10694 | 11545 | - | HTH_3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_10 | 11646 | 11783 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2120 | ShaoY_2019_ERR3405828_bin.1_k141_2120_11 | 11854 | 13452 | - | 3.A.1.106.15 |
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_2
Type: TC
Location: 2718 - 4181 (-)
Type: TC
Location: 2718 - 4181 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_3
Type:
Location: 4407 - 5201 (-)
Type:
Location: 4407 - 5201 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_4
Type: TC
Location: 5316 - 6170 (-)
Type: TC
Location: 5316 - 6170 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_5
Type: pfam
Location: 6677 - 7627 (-)
Type: pfam
Location: 6677 - 7627 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_6
Type: CAZyme
Location: 7808 - 8599 (-)
Type: CAZyme
Location: 7808 - 8599 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_7
Type:
Location: 8743 - 8946 (-)
Type:
Location: 8743 - 8946 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_8
Type: TC
Location: 8994 - 10607 (-)
Type: TC
Location: 8994 - 10607 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_9
Type: TF
Location: 10694 - 11545 (-)
Type: TF
Location: 10694 - 11545 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_10
Type:
Location: 11646 - 11783 (+)
Type:
Location: 11646 - 11783 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2120_11
Type: TC
Location: 11854 - 13452 (-)
Type: TC
Location: 11854 - 13452 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Granulicatella
Species
Granulicatella sp001058355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.