Cluster: ShaoY_2019_ERR3405828_bin.1_CGC3
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405828_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_1248 | ShaoY_2019_ERR3405828_bin.1_k141_1248_5 | 6676 | 8118 | - | GH13_18 |
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_1248 | ShaoY_2019_ERR3405828_bin.1_k141_1248_6 | 8150 | 10411 | - | GT35 |
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_1248 | ShaoY_2019_ERR3405828_bin.1_k141_1248_7 | 10440 | 11978 | - | GH77 |
| STP | ShaoY_2019_ERR3405828_bin.1_k141_1248 | ShaoY_2019_ERR3405828_bin.1_k141_1248_8 | 12317 | 13615 | + | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_1248 | ShaoY_2019_ERR3405828_bin.1_k141_1248_9 | 13737 | 14663 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_1248 | ShaoY_2019_ERR3405828_bin.1_k141_1248_10 | 14663 | 15538 | + | 3.A.1.1.45 |
| TF | ShaoY_2019_ERR3405828_bin.1_k141_1248 | ShaoY_2019_ERR3405828_bin.1_k141_1248_11 | 15629 | 16612 | + | LacI |
| pfam | ShaoY_2019_ERR3405828_bin.1_k141_1248 | ShaoY_2019_ERR3405828_bin.1_k141_1248_12 | 16784 | 17053 | - | Ribosomal_S15 |
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_1248 | ShaoY_2019_ERR3405828_bin.1_k141_1248_13 | 17187 | 18788 | - | CE4 |
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_1248_5
Type: CAZyme
Location: 6676 - 8118 (-)
Type: CAZyme
Location: 6676 - 8118 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_1248_6
Type: CAZyme
Location: 8150 - 10411 (-)
Type: CAZyme
Location: 8150 - 10411 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_1248_7
Type: CAZyme
Location: 10440 - 11978 (-)
Type: CAZyme
Location: 10440 - 11978 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_1248_8
Type: STP
Location: 12317 - 13615 (+)
Type: STP
Location: 12317 - 13615 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_1248_9
Type: TC
Location: 13737 - 14663 (+)
Type: TC
Location: 13737 - 14663 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_1248_10
Type: TC
Location: 14663 - 15538 (+)
Type: TC
Location: 14663 - 15538 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_1248_11
Type: TF
Location: 15629 - 16612 (+)
Type: TF
Location: 15629 - 16612 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_1248_12
Type: pfam
Location: 16784 - 17053 (-)
Type: pfam
Location: 16784 - 17053 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_1248_13
Type: CAZyme
Location: 17187 - 18788 (-)
Type: CAZyme
Location: 17187 - 18788 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Granulicatella
Species
Granulicatella sp001058355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.