Cluster: ShaoY_2019_ERR3405828_bin.1_CGC22
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405828_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405828_bin.1_k141_3509 | ShaoY_2019_ERR3405828_bin.1_k141_3509_7 | 5896 | 6852 | + | 9.B.146.1.3 |
| pfam | ShaoY_2019_ERR3405828_bin.1_k141_3509 | ShaoY_2019_ERR3405828_bin.1_k141_3509_8 | 6944 | 8302 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_3509 | ShaoY_2019_ERR3405828_bin.1_k141_3509_9 | 8320 | 9423 | + | GT28 |
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3509_7
Type: TC
Location: 5896 - 6852 (+)
Type: TC
Location: 5896 - 6852 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3509_8
Type: pfam
Location: 6944 - 8302 (+)
Type: pfam
Location: 6944 - 8302 (+)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3509_9
Type: CAZyme
Location: 8320 - 9423 (+)
Type: CAZyme
Location: 8320 - 9423 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Granulicatella
Species
Granulicatella sp001058355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.