Cluster: ShaoY_2019_ERR3405828_bin.1_CGC18
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405828_bin.1
- CGC Family ID: CGCFAM_06005
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_3061 | ShaoY_2019_ERR3405828_bin.1_k141_3061_19 | 20258 | 21268 | - | GT2 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_3061 | ShaoY_2019_ERR3405828_bin.1_k141_3061_20 | 21372 | 23177 | - | 9.B.18.2.1 |
| pfam | ShaoY_2019_ERR3405828_bin.1_k141_3061 | ShaoY_2019_ERR3405828_bin.1_k141_3061_21 | 23196 | 24413 | - | Aminotran_1_2 | DegT_DnrJ_EryC1 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_3061 | ShaoY_2019_ERR3405828_bin.1_k141_3061_22 | 24429 | 25121 | - | 9.B.18.1.2 |
| pfam | ShaoY_2019_ERR3405828_bin.1_k141_3061 | ShaoY_2019_ERR3405828_bin.1_k141_3061_23 | 25288 | 26505 | - | Flavoprotein | DFP |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_3061 | ShaoY_2019_ERR3405828_bin.1_k141_3061_24 | 26509 | 27096 | - | 2.A.87.2.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405828_bin.1_k141_3061 | ShaoY_2019_ERR3405828_bin.1_k141_3061_25 | 27211 | 27363 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_3061 | ShaoY_2019_ERR3405828_bin.1_k141_3061_26 | 27522 | 29249 | - | 8.A.7.1.1 |
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3061_19
Type: CAZyme
Location: 20258 - 21268 (-)
Type: CAZyme
Location: 20258 - 21268 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3061_20
Type: TC
Location: 21372 - 23177 (-)
Type: TC
Location: 21372 - 23177 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3061_21
Type: pfam
Location: 23196 - 24413 (-)
Type: pfam
Location: 23196 - 24413 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3061_22
Type: TC
Location: 24429 - 25121 (-)
Type: TC
Location: 24429 - 25121 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3061_23
Type: pfam
Location: 25288 - 26505 (-)
Type: pfam
Location: 25288 - 26505 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3061_24
Type: TC
Location: 26509 - 27096 (-)
Type: TC
Location: 26509 - 27096 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3061_25
Type:
Location: 27211 - 27363 (-)
Type:
Location: 27211 - 27363 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_3061_26
Type: TC
Location: 27522 - 29249 (-)
Type: TC
Location: 27522 - 29249 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Granulicatella
Species
Granulicatella sp001058355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.