Cluster: ShaoY_2019_ERR3405828_bin.1_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405828_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_16 | 14161 | 16380 | - | GH16_3 |
| pfam | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_17 | 16740 | 19529 | - | tRNA-synt_1 | tRNA-synt_1e | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| CAZyme | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_18 | 19981 | 26127 | - | GH101 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_19 | 26321 | 26953 | - | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_20 | 26959 | 28335 | - | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_21 | 28328 | 30109 | - | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_22 | 30144 | 30455 | - | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_23 | 30445 | 31446 | - | 3.A.2.2.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_24 | 31458 | 32042 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_25 | 32057 | 32539 | - | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3405828_bin.1_k141_2893 | ShaoY_2019_ERR3405828_bin.1_k141_2893_26 | 32557 | 34521 | - | 3.A.2.2.2 |
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_16
Type: CAZyme
Location: 14161 - 16380 (-)
Type: CAZyme
Location: 14161 - 16380 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_17
Type: pfam
Location: 16740 - 19529 (-)
Type: pfam
Location: 16740 - 19529 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_18
Type: CAZyme
Location: 19981 - 26127 (-)
Type: CAZyme
Location: 19981 - 26127 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_19
Type: TC
Location: 26321 - 26953 (-)
Type: TC
Location: 26321 - 26953 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_20
Type: TC
Location: 26959 - 28335 (-)
Type: TC
Location: 26959 - 28335 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_21
Type: TC
Location: 28328 - 30109 (-)
Type: TC
Location: 28328 - 30109 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_22
Type: TC
Location: 30144 - 30455 (-)
Type: TC
Location: 30144 - 30455 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_23
Type: TC
Location: 30445 - 31446 (-)
Type: TC
Location: 30445 - 31446 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_24
Type:
Location: 31458 - 32042 (-)
Type:
Location: 31458 - 32042 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_25
Type: TC
Location: 32057 - 32539 (-)
Type: TC
Location: 32057 - 32539 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_26
Type: TC
Location: 32557 - 34521 (-)
Type: TC
Location: 32557 - 34521 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Granulicatella
Species
Granulicatella sp001058355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.