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Cluster: ShaoY_2019_ERR3405828_bin.1_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405828_bin.1_k141_2893 ShaoY_2019_ERR3405828_bin.1_k141_2893_3 1619 2317 - 9.B.104.1.3
pfam ShaoY_2019_ERR3405828_bin.1_k141_2893 ShaoY_2019_ERR3405828_bin.1_k141_2893_4 2310 3437 - 5-FTHF_cyc-lig
TC ShaoY_2019_ERR3405828_bin.1_k141_2893 ShaoY_2019_ERR3405828_bin.1_k141_2893_5 3810 4127 - 4.A.3.2.2
TC ShaoY_2019_ERR3405828_bin.1_k141_2893 ShaoY_2019_ERR3405828_bin.1_k141_2893_6 4129 4431 - 4.A.3.2.6
TC ShaoY_2019_ERR3405828_bin.1_k141_2893 ShaoY_2019_ERR3405828_bin.1_k141_2893_7 4436 5731 - 4.A.3.2.9
CAZyme ShaoY_2019_ERR3405828_bin.1_k141_2893 ShaoY_2019_ERR3405828_bin.1_k141_2893_8 5749 7158 - GH1
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_3
Type: TC
Location: 1619 - 2317 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_4
Type: pfam
Location: 2310 - 3437 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_5
Type: TC
Location: 3810 - 4127 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_6
Type: TC
Location: 4129 - 4431 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_7
Type: TC
Location: 4436 - 5731 (-)
Gene ID: ShaoY_2019_ERR3405828_bin.1_k141_2893_8
Type: CAZyme
Location: 5749 - 7158 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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