Cluster: ShaoY_2019_ERR3405726_bin.1_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405726_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_16 | 12284 | 13453 | + | 2.A.1.17.3 |
| CAZyme | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_17 | 13548 | 14702 | - | CBM50 |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_18 | 15204 | 15827 | - | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_19 | 15831 | 17216 | - | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_20 | 17203 | 18993 | - | 3.A.2.2.2 |
| pfam | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_21 | 19027 | 19731 | - | Acetyltransf_1 | Acetyltransf_3 |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_22 | 19728 | 20048 | - | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_23 | 20029 | 21048 | - | 3.A.2.2.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_24 | 21058 | 21648 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_25 | 21717 | 22196 | - | 3.A.2.2.2 |
| TC | ShaoY_2019_ERR3405726_bin.1_k141_838 | ShaoY_2019_ERR3405726_bin.1_k141_838_26 | 22227 | 24188 | - | 3.A.2.2.2 |
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_16
Type: TC
Location: 12284 - 13453 (+)
Type: TC
Location: 12284 - 13453 (+)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_17
Type: CAZyme
Location: 13548 - 14702 (-)
Type: CAZyme
Location: 13548 - 14702 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_18
Type: TC
Location: 15204 - 15827 (-)
Type: TC
Location: 15204 - 15827 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_19
Type: TC
Location: 15831 - 17216 (-)
Type: TC
Location: 15831 - 17216 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_20
Type: TC
Location: 17203 - 18993 (-)
Type: TC
Location: 17203 - 18993 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_21
Type: pfam
Location: 19027 - 19731 (-)
Type: pfam
Location: 19027 - 19731 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_22
Type: TC
Location: 19728 - 20048 (-)
Type: TC
Location: 19728 - 20048 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_23
Type: TC
Location: 20029 - 21048 (-)
Type: TC
Location: 20029 - 21048 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_24
Type:
Location: 21058 - 21648 (-)
Type:
Location: 21058 - 21648 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_25
Type: TC
Location: 21717 - 22196 (-)
Type: TC
Location: 21717 - 22196 (-)
Gene ID: ShaoY_2019_ERR3405726_bin.1_k141_838_26
Type: TC
Location: 22227 - 24188 (-)
Type: TC
Location: 22227 - 24188 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus parasanguinis_H
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405726_bin.1_k141_838_21 | vegan > omnivore | 2.92883 | 0.00664 |
| ShaoY_2019_ERR3405726_bin.1_k141_838_21 | vegetarian > omnivore | 3.06503 | 0.00433 |
| ShaoY_2019_ERR3405726_bin.1_k141_838_25 | vegan > omnivore | 1.52373 | 0.00664 |