Cluster: ShaoY_2019_ERR3405641_bin.1_CGC19
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: ShaoY_2019_ERR3405641_bin.1
- CGC Family ID: CGCFAM_00598
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_3 | 1159 | 3393 | - | GT51 |
| pfam | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_4 | 3497 | 4360 | + | PseudoU_synth_2 |
| CAZyme | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_5 | 4390 | 8181 | - | GH25 |
| CAZyme | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_6 | 8325 | 9377 | - | GT113 |
| pfam | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_7 | 9388 | 10380 | - | Stealth_CR2 | Stealth_CR1 |
| STP | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_8 | 10377 | 11477 | - | Pyr_redox |
| TC | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_9 | 11498 | 12496 | - | 9.B.97.1.1 |
| TC | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_10 | 12499 | 13914 | - | 2.A.66.2.16 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_11 | 13966 | 15141 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_12 | 15220 | 16209 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_13 | 16227 | 17201 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_14 | 17336 | 18484 | - | GT4 |
| CAZyme | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_15 | 18487 | 19659 | - | GT4 |
| TC | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_16 | 19698 | 21074 | - | 9.B.18.1.2 |
| TC | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_17 | 21094 | 21786 | - | 8.A.3.2.2 |
| TC | ShaoY_2019_ERR3405641_bin.1_k141_3401 | ShaoY_2019_ERR3405641_bin.1_k141_3401_18 | 21799 | 22494 | - | 8.A.3.2.3 |
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_3
Type: CAZyme
Location: 1159 - 3393 (-)
Type: CAZyme
Location: 1159 - 3393 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_4
Type: pfam
Location: 3497 - 4360 (+)
Type: pfam
Location: 3497 - 4360 (+)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_5
Type: CAZyme
Location: 4390 - 8181 (-)
Type: CAZyme
Location: 4390 - 8181 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_6
Type: CAZyme
Location: 8325 - 9377 (-)
Type: CAZyme
Location: 8325 - 9377 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_7
Type: pfam
Location: 9388 - 10380 (-)
Type: pfam
Location: 9388 - 10380 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_8
Type: STP
Location: 10377 - 11477 (-)
Type: STP
Location: 10377 - 11477 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_9
Type: TC
Location: 11498 - 12496 (-)
Type: TC
Location: 11498 - 12496 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_10
Type: TC
Location: 12499 - 13914 (-)
Type: TC
Location: 12499 - 13914 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_11
Type:
Location: 13966 - 15141 (-)
Type:
Location: 13966 - 15141 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_12
Type: CAZyme
Location: 15220 - 16209 (-)
Type: CAZyme
Location: 15220 - 16209 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_13
Type: CAZyme
Location: 16227 - 17201 (-)
Type: CAZyme
Location: 16227 - 17201 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_14
Type: CAZyme
Location: 17336 - 18484 (-)
Type: CAZyme
Location: 17336 - 18484 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_15
Type: CAZyme
Location: 18487 - 19659 (-)
Type: CAZyme
Location: 18487 - 19659 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_16
Type: TC
Location: 19698 - 21074 (-)
Type: TC
Location: 19698 - 21074 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_17
Type: TC
Location: 21094 - 21786 (-)
Type: TC
Location: 21094 - 21786 (-)
Gene ID: ShaoY_2019_ERR3405641_bin.1_k141_3401_18
Type: TC
Location: 21799 - 22494 (-)
Type: TC
Location: 21799 - 22494 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp902479835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.