Cluster: ShaoY_2019_ERR3405637_bin.3_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405637_bin.3
- CGC Family ID: CGCFAM_00013
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_228 | 250398 | 251750 | + | 2.A.66.1.34 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_229 | 251956 | 252405 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_230 | 252720 | 253145 | + | MarR |
| TC | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_231 | 253264 | 254997 | + | 3.A.1.135.5 |
| TC | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_232 | 254990 | 256888 | + | 3.A.1.135.5 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_233 | 257154 | 257501 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_234 | 257541 | 259529 | + | Transpeptidase | PBP_dimer | PASTA |
| TC | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_235 | 259878 | 260843 | + | 9.B.146.1.6 |
| pfam | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_236 | 260863 | 262218 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_237 | 262272 | 263408 | + | 2.A.103.1.3 |
| CAZyme | ShaoY_2019_ERR3405637_bin.3_k141_3067 | ShaoY_2019_ERR3405637_bin.3_k141_3067_238 | 263423 | 264640 | + | GT28 |
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_228
Type: TC
Location: 250398 - 251750 (+)
Type: TC
Location: 250398 - 251750 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_229
Type:
Location: 251956 - 252405 (-)
Type:
Location: 251956 - 252405 (-)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_230
Type: TF
Location: 252720 - 253145 (+)
Type: TF
Location: 252720 - 253145 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_231
Type: TC
Location: 253264 - 254997 (+)
Type: TC
Location: 253264 - 254997 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_232
Type: TC
Location: 254990 - 256888 (+)
Type: TC
Location: 254990 - 256888 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_233
Type:
Location: 257154 - 257501 (+)
Type:
Location: 257154 - 257501 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_234
Type: pfam
Location: 257541 - 259529 (+)
Type: pfam
Location: 257541 - 259529 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_235
Type: TC
Location: 259878 - 260843 (+)
Type: TC
Location: 259878 - 260843 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_236
Type: pfam
Location: 260863 - 262218 (+)
Type: pfam
Location: 260863 - 262218 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_237
Type: TC
Location: 262272 - 263408 (+)
Type: TC
Location: 262272 - 263408 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_3067_238
Type: CAZyme
Location: 263423 - 264640 (+)
Type: CAZyme
Location: 263423 - 264640 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Intestinibacter
Species
Intestinibacter sp900540355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.