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Cluster: ShaoY_2019_ERR3405637_bin.3_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405637_bin.3_k141_838 ShaoY_2019_ERR3405637_bin.3_k141_838_85 85322 86749 + 2.A.66.1.32
TF ShaoY_2019_ERR3405637_bin.3_k141_838 ShaoY_2019_ERR3405637_bin.3_k141_838_86 86934 87944 - LacI
TC ShaoY_2019_ERR3405637_bin.3_k141_838 ShaoY_2019_ERR3405637_bin.3_k141_838_87 88186 89607 + 4.A.1.2.2
CAZyme ShaoY_2019_ERR3405637_bin.3_k141_838 ShaoY_2019_ERR3405637_bin.3_k141_838_88 89644 90921 + GH140
peptidase ShaoY_2019_ERR3405637_bin.3_k141_838 ShaoY_2019_ERR3405637_bin.3_k141_838_89 90932 92242 + S09.UPD
TC ShaoY_2019_ERR3405637_bin.3_k141_838 ShaoY_2019_ERR3405637_bin.3_k141_838_90 92259 92762 + 4.A.1.2.5
CAZyme ShaoY_2019_ERR3405637_bin.3_k141_838 ShaoY_2019_ERR3405637_bin.3_k141_838_91 92776 94218 + GH1
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_838_85
Type: TC
Location: 85322 - 86749 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_838_86
Type: TF
Location: 86934 - 87944 (-)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_838_87
Type: TC
Location: 88186 - 89607 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_838_88
Type: CAZyme
Location: 89644 - 90921 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_838_89
Type: peptidase
Location: 90932 - 92242 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_838_90
Type: TC
Location: 92259 - 92762 (+)
Gene ID: ShaoY_2019_ERR3405637_bin.3_k141_838_91
Type: CAZyme
Location: 92776 - 94218 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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