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Cluster: ShaoY_2019_ERR3405592_bin.2_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_14 10132 11073 + 2.A.115.1.1
TF ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_15 11107 12093 - LacI
NULL(UNKNOWN) ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_16 12103 12909 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_17 13202 14044 - 3.A.1.1.26
TC ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_18 14046 15338 - 3.A.1.1.26
TC ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_19 15465 16736 - 3.A.1.1.26
CAZyme ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_20 17213 18730 + GH77
CAZyme ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_21 18755 21013 + GT35
pfam ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_22 21581 22429 - Methyltransf_11 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA
pfam ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_23 22581 22859 + DUF6110
TC ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_24 22861 24921 + 3.A.3.32.6
pfam ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_25 24999 26255 - tRNA-synt_1b | S4 | SYY_C-terminal
CAZyme ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_26 26396 28903 + GT51
TC ShaoY_2019_ERR3405592_bin.2_k141_269 ShaoY_2019_ERR3405592_bin.2_k141_269_27 28981 29892 + 2.A.7.3.12
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_14
Type: TC
Location: 10132 - 11073 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_15
Type: TF
Location: 11107 - 12093 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_16
Type:
Location: 12103 - 12909 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_17
Type: TC
Location: 13202 - 14044 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_18
Type: TC
Location: 14046 - 15338 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_19
Type: TC
Location: 15465 - 16736 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_20
Type: CAZyme
Location: 17213 - 18730 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_21
Type: CAZyme
Location: 18755 - 21013 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_22
Type: pfam
Location: 21581 - 22429 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_23
Type: pfam
Location: 22581 - 22859 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_24
Type: TC
Location: 22861 - 24921 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_25
Type: pfam
Location: 24999 - 26255 (-)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_26
Type: CAZyme
Location: 26396 - 28903 (+)
Gene ID: ShaoY_2019_ERR3405592_bin.2_k141_269_27
Type: TC
Location: 28981 - 29892 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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