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Cluster: ShaoY_2019_ERR3405274_bin.1_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_34 30219 31439 - 2.A.1.15.12
TF ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_35 31738 32646 + HTH_1
TC ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_36 32896 35343 + 2.A.16.2.2
NULL(UNKNOWN) ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_37 35458 35811 - NULL(UNKNOWN)
[View Structural Homologs]
pfam ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_38 35936 37354 - DUF4317
TC ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_39 37613 38935 + 2.A.3.8.12
TC ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_40 39099 39926 - 4.A.6.1.4
TC ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_41 39916 40728 - 4.A.6.1.4
TC ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_42 40748 41224 - 4.A.6.1.4
TF ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_43 41581 42747 + HTH_AraC | HTH_AraC
pfam ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_44 42860 43138 - YajC
TC ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_45 43140 43571 - 4.A.6.1.14
STP ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_46 43618 44796 - SIS | SIS
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_592 ShaoY_2019_ERR3405274_bin.1_k141_592_47 44965 46104 + CE9
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_34
Type: TC
Location: 30219 - 31439 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_35
Type: TF
Location: 31738 - 32646 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_36
Type: TC
Location: 32896 - 35343 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_37
Type:
Location: 35458 - 35811 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_38
Type: pfam
Location: 35936 - 37354 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_39
Type: TC
Location: 37613 - 38935 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_40
Type: TC
Location: 39099 - 39926 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_41
Type: TC
Location: 39916 - 40728 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_42
Type: TC
Location: 40748 - 41224 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_43
Type: TF
Location: 41581 - 42747 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_44
Type: pfam
Location: 42860 - 43138 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_45
Type: TC
Location: 43140 - 43571 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_46
Type: STP
Location: 43618 - 44796 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_592_47
Type: CAZyme
Location: 44965 - 46104 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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