Cluster: ShaoY_2019_ERR3405274_bin.1_CGC65
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_7 | 8951 | 10072 | + | CE17 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_8 | 10088 | 11170 | + | CE2 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_9 | 11327 | 12346 | + | GH130_2 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_10 | 12554 | 13492 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_11 | 13619 | 15805 | + | GH36 |
| STP | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_12 | 16145 | 18037 | + | SBP_bac_5 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_13 | 18109 | 19083 | + | 3.A.1.5.9 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_14 | 19087 | 19998 | + | 3.A.1.5.9 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_15 | 20010 | 21029 | + | 3.A.1.5.9 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_16 | 21022 | 22041 | + | 3.A.1.5.20 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_17 | 21987 | 22241 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_18 | 22279 | 22470 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_6490 | ShaoY_2019_ERR3405274_bin.1_k141_6490_19 | 22532 | 24310 | - | 8.A.59.2.1 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_7
Type: CAZyme
Location: 8951 - 10072 (+)
Type: CAZyme
Location: 8951 - 10072 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_8
Type: CAZyme
Location: 10088 - 11170 (+)
Type: CAZyme
Location: 10088 - 11170 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_9
Type: CAZyme
Location: 11327 - 12346 (+)
Type: CAZyme
Location: 11327 - 12346 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_10
Type: pfam
Location: 12554 - 13492 (+)
Type: pfam
Location: 12554 - 13492 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_11
Type: CAZyme
Location: 13619 - 15805 (+)
Type: CAZyme
Location: 13619 - 15805 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_12
Type: STP
Location: 16145 - 18037 (+)
Type: STP
Location: 16145 - 18037 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_13
Type: TC
Location: 18109 - 19083 (+)
Type: TC
Location: 18109 - 19083 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_14
Type: TC
Location: 19087 - 19998 (+)
Type: TC
Location: 19087 - 19998 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_15
Type: TC
Location: 20010 - 21029 (+)
Type: TC
Location: 20010 - 21029 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_16
Type: TC
Location: 21022 - 22041 (+)
Type: TC
Location: 21022 - 22041 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_17
Type:
Location: 21987 - 22241 (+)
Type:
Location: 21987 - 22241 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_18
Type:
Location: 22279 - 22470 (+)
Type:
Location: 22279 - 22470 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6490_19
Type: TC
Location: 22532 - 24310 (-)
Type: TC
Location: 22532 - 24310 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.