Cluster: ShaoY_2019_ERR3405274_bin.1_CGC64
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_6267 | ShaoY_2019_ERR3405274_bin.1_k141_6267_49 | 59962 | 62037 | - | GH39 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_6267 | ShaoY_2019_ERR3405274_bin.1_k141_6267_50 | 62486 | 65080 | + | 3.A.9.1.2 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_6267 | ShaoY_2019_ERR3405274_bin.1_k141_6267_51 | 65503 | 65850 | + | Flavodoxin_NdrI |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_6267 | ShaoY_2019_ERR3405274_bin.1_k141_6267_52 | 65937 | 66125 | - | SASP |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_6267 | ShaoY_2019_ERR3405274_bin.1_k141_6267_53 | 66348 | 66974 | - | 2.A.87.2.3 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_6267 | ShaoY_2019_ERR3405274_bin.1_k141_6267_54 | 67176 | 67889 | + | 3.A.1.147.6 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_6267 | ShaoY_2019_ERR3405274_bin.1_k141_6267_55 | 67882 | 69471 | + | 3.A.1.147.6 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_49
Type: CAZyme
Location: 59962 - 62037 (-)
Type: CAZyme
Location: 59962 - 62037 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_50
Type: TC
Location: 62486 - 65080 (+)
Type: TC
Location: 62486 - 65080 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_51
Type: pfam
Location: 65503 - 65850 (+)
Type: pfam
Location: 65503 - 65850 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_52
Type: pfam
Location: 65937 - 66125 (-)
Type: pfam
Location: 65937 - 66125 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_53
Type: TC
Location: 66348 - 66974 (-)
Type: TC
Location: 66348 - 66974 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_54
Type: TC
Location: 67176 - 67889 (+)
Type: TC
Location: 67176 - 67889 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_55
Type: TC
Location: 67882 - 69471 (+)
Type: TC
Location: 67882 - 69471 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.