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Cluster: ShaoY_2019_ERR3405274_bin.1_CGC63

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_9 5993 7018 + 3.A.1.24.2
TC ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_10 7018 7653 + 3.A.1.24.5
TC ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_11 7859 8683 + 3.A.1.24.5
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_12 9122 12472 + GH94
STP ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_13 12736 14100 + SBP_bac_1
STP ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_14 14127 17048 + SBP_bac_1
TC ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_15 17051 18001 + 3.A.1.1.34
TC ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_16 18017 18889 + 3.A.1.1.39
pfam ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_17 18903 20918 + Yip1
pfam ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_18 20911 23121 + DUF5696
TC ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_19 23124 23993 + 3.A.1.1.11
TC ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_20 24023 24964 + 3.A.1.1.11
TF ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_21 25140 26156 + LacI
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_22 26173 26919 - CE1
TF ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_23 27157 28008 - HTH_AraC
TC ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_24 28139 29887 + 3.A.1.106.3
TC ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_25 29880 31652 + 3.A.1.106.3
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_26 31914 34112 + GH3
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_27 34203 36620 + GH35
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_28 36642 37910 + GH144
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_29 37970 39238 + GH144
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_6267 ShaoY_2019_ERR3405274_bin.1_k141_6267_30 39253 40881 + GH13_31
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_9
Type: TC
Location: 5993 - 7018 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_10
Type: TC
Location: 7018 - 7653 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_11
Type: TC
Location: 7859 - 8683 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_12
Type: CAZyme
Location: 9122 - 12472 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_13
Type: STP
Location: 12736 - 14100 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_14
Type: STP
Location: 14127 - 17048 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_15
Type: TC
Location: 17051 - 18001 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_16
Type: TC
Location: 18017 - 18889 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_17
Type: pfam
Location: 18903 - 20918 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_18
Type: pfam
Location: 20911 - 23121 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_19
Type: TC
Location: 23124 - 23993 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_20
Type: TC
Location: 24023 - 24964 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_21
Type: TF
Location: 25140 - 26156 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_22
Type: CAZyme
Location: 26173 - 26919 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_23
Type: TF
Location: 27157 - 28008 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_24
Type: TC
Location: 28139 - 29887 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_25
Type: TC
Location: 29880 - 31652 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_26
Type: CAZyme
Location: 31914 - 34112 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_27
Type: CAZyme
Location: 34203 - 36620 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_28
Type: CAZyme
Location: 36642 - 37910 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_29
Type: CAZyme
Location: 37970 - 39238 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_6267_30
Type: CAZyme
Location: 39253 - 40881 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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