Cluster: ShaoY_2019_ERR3405274_bin.1_CGC60
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_5882 | ShaoY_2019_ERR3405274_bin.1_k141_5882_3 | 2056 | 5088 | - | GH2 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_5882 | ShaoY_2019_ERR3405274_bin.1_k141_5882_4 | 5122 | 5967 | - | 3.A.1.1.4 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_5882 | ShaoY_2019_ERR3405274_bin.1_k141_5882_5 | 5960 | 6856 | - | 3.A.1.1.4 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_5882 | ShaoY_2019_ERR3405274_bin.1_k141_5882_6 | 6930 | 8237 | - | 3.A.1.1.4 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_5882 | ShaoY_2019_ERR3405274_bin.1_k141_5882_7 | 8719 | 10356 | - | 2.A.53.3.11 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_5882 | ShaoY_2019_ERR3405274_bin.1_k141_5882_8 | 10557 | 10901 | - | FMN_bind |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_5882 | ShaoY_2019_ERR3405274_bin.1_k141_5882_9 | 10927 | 12348 | - | 3.D.10.1.4 |
| TF | ShaoY_2019_ERR3405274_bin.1_k141_5882 | ShaoY_2019_ERR3405274_bin.1_k141_5882_10 | 12454 | 13152 | - | 0037767 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_5882 | ShaoY_2019_ERR3405274_bin.1_k141_5882_11 | 13155 | 14693 | - | 9.B.14.1.13 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5882_3
Type: CAZyme
Location: 2056 - 5088 (-)
Type: CAZyme
Location: 2056 - 5088 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5882_4
Type: TC
Location: 5122 - 5967 (-)
Type: TC
Location: 5122 - 5967 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5882_5
Type: TC
Location: 5960 - 6856 (-)
Type: TC
Location: 5960 - 6856 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5882_6
Type: TC
Location: 6930 - 8237 (-)
Type: TC
Location: 6930 - 8237 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5882_7
Type: TC
Location: 8719 - 10356 (-)
Type: TC
Location: 8719 - 10356 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5882_8
Type: pfam
Location: 10557 - 10901 (-)
Type: pfam
Location: 10557 - 10901 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5882_9
Type: TC
Location: 10927 - 12348 (-)
Type: TC
Location: 10927 - 12348 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5882_10
Type: TF
Location: 12454 - 13152 (-)
Type: TF
Location: 12454 - 13152 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5882_11
Type: TC
Location: 13155 - 14693 (-)
Type: TC
Location: 13155 - 14693 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.