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Cluster: ShaoY_2019_ERR3405274_bin.1_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_5590 ShaoY_2019_ERR3405274_bin.1_k141_5590_16 23179 24543 + GH4
TF ShaoY_2019_ERR3405274_bin.1_k141_5590 ShaoY_2019_ERR3405274_bin.1_k141_5590_17 24873 25676 - HTH_6
TC ShaoY_2019_ERR3405274_bin.1_k141_5590 ShaoY_2019_ERR3405274_bin.1_k141_5590_18 25729 26616 - 2.A.25.1.6
pfam ShaoY_2019_ERR3405274_bin.1_k141_5590 ShaoY_2019_ERR3405274_bin.1_k141_5590_19 26959 27285 + DUF1622
STP ShaoY_2019_ERR3405274_bin.1_k141_5590 ShaoY_2019_ERR3405274_bin.1_k141_5590_20 27438 29162 + Fer4 | Fer4
TC ShaoY_2019_ERR3405274_bin.1_k141_5590 ShaoY_2019_ERR3405274_bin.1_k141_5590_21 29506 30288 + 1.A.30.1.3
TC ShaoY_2019_ERR3405274_bin.1_k141_5590 ShaoY_2019_ERR3405274_bin.1_k141_5590_22 30290 31024 + 1.A.30.1.3
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5590_16
Type: CAZyme
Location: 23179 - 24543 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5590_17
Type: TF
Location: 24873 - 25676 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5590_18
Type: TC
Location: 25729 - 26616 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5590_19
Type: pfam
Location: 26959 - 27285 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5590_20
Type: STP
Location: 27438 - 29162 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5590_21
Type: TC
Location: 29506 - 30288 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_5590_22
Type: TC
Location: 30290 - 31024 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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