Cluster: ShaoY_2019_ERR3405274_bin.1_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_00195
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_417 | ShaoY_2019_ERR3405274_bin.1_k141_417_10 | 9163 | 9840 | + | 8.A.3.2.4 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_417 | ShaoY_2019_ERR3405274_bin.1_k141_417_11 | 9850 | 10503 | + | 8.A.3.2.1 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_417 | ShaoY_2019_ERR3405274_bin.1_k141_417_12 | 10712 | 11479 | + | CpsB_CapC |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_417 | ShaoY_2019_ERR3405274_bin.1_k141_417_13 | 11518 | 12186 | + | 9.B.18.1.2 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_417 | ShaoY_2019_ERR3405274_bin.1_k141_417_14 | 13019 | 14074 | + | GT4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_417 | ShaoY_2019_ERR3405274_bin.1_k141_417_15 | 14141 | 15301 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_417 | ShaoY_2019_ERR3405274_bin.1_k141_417_16 | 15298 | 16275 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_417 | ShaoY_2019_ERR3405274_bin.1_k141_417_17 | 16278 | 17255 | + | GT2 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_417_10
Type: TC
Location: 9163 - 9840 (+)
Type: TC
Location: 9163 - 9840 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_417_11
Type: TC
Location: 9850 - 10503 (+)
Type: TC
Location: 9850 - 10503 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_417_12
Type: pfam
Location: 10712 - 11479 (+)
Type: pfam
Location: 10712 - 11479 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_417_13
Type: TC
Location: 11518 - 12186 (+)
Type: TC
Location: 11518 - 12186 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_417_14
Type: CAZyme
Location: 13019 - 14074 (+)
Type: CAZyme
Location: 13019 - 14074 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_417_15
Type:
Location: 14141 - 15301 (+)
Type:
Location: 14141 - 15301 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_417_16
Type: CAZyme
Location: 15298 - 16275 (+)
Type: CAZyme
Location: 15298 - 16275 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_417_17
Type: CAZyme
Location: 16278 - 17255 (+)
Type: CAZyme
Location: 16278 - 17255 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.