Cluster: ShaoY_2019_ERR3405274_bin.1_CGC46
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3766 | ShaoY_2019_ERR3405274_bin.1_k141_3766_28 | 28234 | 29277 | + | 3.A.1.11.8 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3766 | ShaoY_2019_ERR3405274_bin.1_k141_3766_29 | 29277 | 30125 | + | 3.A.1.11.1 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3766 | ShaoY_2019_ERR3405274_bin.1_k141_3766_30 | 30119 | 30931 | + | 3.A.1.11.8 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3766 | ShaoY_2019_ERR3405274_bin.1_k141_3766_31 | 30918 | 31979 | + | 3.A.1.11.7 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_3766 | ShaoY_2019_ERR3405274_bin.1_k141_3766_32 | 32037 | 32447 | - | NDK |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_3766 | ShaoY_2019_ERR3405274_bin.1_k141_3766_33 | 32587 | 32856 | + | Acylphosphatase |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_3766 | ShaoY_2019_ERR3405274_bin.1_k141_3766_34 | 33302 | 34303 | - | GH73 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3766 | ShaoY_2019_ERR3405274_bin.1_k141_3766_35 | 34714 | 36096 | - | 2.A.25.1.4 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3766_28
Type: TC
Location: 28234 - 29277 (+)
Type: TC
Location: 28234 - 29277 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3766_29
Type: TC
Location: 29277 - 30125 (+)
Type: TC
Location: 29277 - 30125 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3766_30
Type: TC
Location: 30119 - 30931 (+)
Type: TC
Location: 30119 - 30931 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3766_31
Type: TC
Location: 30918 - 31979 (+)
Type: TC
Location: 30918 - 31979 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3766_32
Type: pfam
Location: 32037 - 32447 (-)
Type: pfam
Location: 32037 - 32447 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3766_33
Type: pfam
Location: 32587 - 32856 (+)
Type: pfam
Location: 32587 - 32856 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3766_34
Type: CAZyme
Location: 33302 - 34303 (-)
Type: CAZyme
Location: 33302 - 34303 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3766_35
Type: TC
Location: 34714 - 36096 (-)
Type: TC
Location: 34714 - 36096 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.