Cluster: ShaoY_2019_ERR3405274_bin.1_CGC44
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_10773
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3514 | ShaoY_2019_ERR3405274_bin.1_k141_3514_41 | 42117 | 43829 | - | 3.A.1.106.2 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_3514 | ShaoY_2019_ERR3405274_bin.1_k141_3514_42 | 43946 | 44368 | - | DUF327 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3514 | ShaoY_2019_ERR3405274_bin.1_k141_3514_43 | 44493 | 47108 | + | 3.A.3.2.21 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3514 | ShaoY_2019_ERR3405274_bin.1_k141_3514_44 | 47639 | 48322 | - | 3.A.1.3.24 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3514 | ShaoY_2019_ERR3405274_bin.1_k141_3514_45 | 48334 | 48984 | - | 3.A.1.3.15 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3514 | ShaoY_2019_ERR3405274_bin.1_k141_3514_46 | 49009 | 49809 | - | 3.A.1.3.10 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_3514 | ShaoY_2019_ERR3405274_bin.1_k141_3514_47 | 49986 | 51398 | - | GH1 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3514 | ShaoY_2019_ERR3405274_bin.1_k141_3514_48 | 51473 | 53356 | - | 4.A.1.2.11 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3514_41
Type: TC
Location: 42117 - 43829 (-)
Type: TC
Location: 42117 - 43829 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3514_42
Type: pfam
Location: 43946 - 44368 (-)
Type: pfam
Location: 43946 - 44368 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3514_43
Type: TC
Location: 44493 - 47108 (+)
Type: TC
Location: 44493 - 47108 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3514_44
Type: TC
Location: 47639 - 48322 (-)
Type: TC
Location: 47639 - 48322 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3514_45
Type: TC
Location: 48334 - 48984 (-)
Type: TC
Location: 48334 - 48984 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3514_46
Type: TC
Location: 49009 - 49809 (-)
Type: TC
Location: 49009 - 49809 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3514_47
Type: CAZyme
Location: 49986 - 51398 (-)
Type: CAZyme
Location: 49986 - 51398 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3514_48
Type: TC
Location: 51473 - 53356 (-)
Type: TC
Location: 51473 - 53356 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.