Cluster: ShaoY_2019_ERR3405274_bin.1_CGC43
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_03869
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3243 | ShaoY_2019_ERR3405274_bin.1_k141_3243_1 | 223 | 2160 | + | 3.A.1.121.4 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_3243 | ShaoY_2019_ERR3405274_bin.1_k141_3243_2 | 2335 | 2787 | - | dUTPase |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_3243 | ShaoY_2019_ERR3405274_bin.1_k141_3243_3 | 2880 | 3605 | - | SpaA |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3243 | ShaoY_2019_ERR3405274_bin.1_k141_3243_4 | 3693 | 5924 | - | 9.B.34.1.2 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_3243 | ShaoY_2019_ERR3405274_bin.1_k141_3243_5 | 6056 | 6808 | + | CE4 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3243 | ShaoY_2019_ERR3405274_bin.1_k141_3243_6 | 7105 | 7632 | - | 2.A.88.4.1 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3243 | ShaoY_2019_ERR3405274_bin.1_k141_3243_7 | 8002 | 9384 | - | 2.A.66.1.28 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_3243 | ShaoY_2019_ERR3405274_bin.1_k141_3243_8 | 9517 | 11244 | - | 9.B.34.1.2 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3243_1
Type: TC
Location: 223 - 2160 (+)
Type: TC
Location: 223 - 2160 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3243_2
Type: pfam
Location: 2335 - 2787 (-)
Type: pfam
Location: 2335 - 2787 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3243_3
Type: pfam
Location: 2880 - 3605 (-)
Type: pfam
Location: 2880 - 3605 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3243_4
Type: TC
Location: 3693 - 5924 (-)
Type: TC
Location: 3693 - 5924 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3243_5
Type: CAZyme
Location: 6056 - 6808 (+)
Type: CAZyme
Location: 6056 - 6808 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3243_6
Type: TC
Location: 7105 - 7632 (-)
Type: TC
Location: 7105 - 7632 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3243_7
Type: TC
Location: 8002 - 9384 (-)
Type: TC
Location: 8002 - 9384 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_3243_8
Type: TC
Location: 9517 - 11244 (-)
Type: TC
Location: 9517 - 11244 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.