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Cluster: ShaoY_2019_ERR3405274_bin.1_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_3 1238 2311 - GH170
pfam ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_4 2455 2838 - Esterase
TC ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_5 2988 4349 - 4.A.1.2.7
STP ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_6 4380 5285 - SIS
peptidase ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_7 6094 7389 - M18.UPW
TC ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_8 7727 8908 + 2.A.4.7.4
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_9 9045 10505 - GH1
TC ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_10 10508 11893 - 4.A.1.2.11
TF ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_11 12073 13062 + HTH_AraC | HTH_AraC
pfam ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_12 13121 14077 - BcrAD_BadFG
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_13 14088 15182 - GH170
TC ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_14 15356 16726 - 4.A.3.2.2
pfam ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_15 16798 17106 - PTS_IIB
NULL(UNKNOWN) ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_16 17159 17491 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_17 17522 17872 - 4.A.3.2.2
TF ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_18 18532 18741 - HTH_3
pfam ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_19 18753 19235 - DUF2975
CAZyme ShaoY_2019_ERR3405274_bin.1_k141_2291 ShaoY_2019_ERR3405274_bin.1_k141_2291_20 19521 22493 - GH171 | GH171
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_3
Type: CAZyme
Location: 1238 - 2311 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_4
Type: pfam
Location: 2455 - 2838 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_5
Type: TC
Location: 2988 - 4349 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_6
Type: STP
Location: 4380 - 5285 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_7
Type: peptidase
Location: 6094 - 7389 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_8
Type: TC
Location: 7727 - 8908 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_9
Type: CAZyme
Location: 9045 - 10505 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_10
Type: TC
Location: 10508 - 11893 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_11
Type: TF
Location: 12073 - 13062 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_12
Type: pfam
Location: 13121 - 14077 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_13
Type: CAZyme
Location: 14088 - 15182 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_14
Type: TC
Location: 15356 - 16726 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_15
Type: pfam
Location: 16798 - 17106 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_16
Type:
Location: 17159 - 17491 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_17
Type: TC
Location: 17522 - 17872 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_18
Type: TF
Location: 18532 - 18741 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_19
Type: pfam
Location: 18753 - 19235 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2291_20
Type: CAZyme
Location: 19521 - 22493 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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