Cluster: ShaoY_2019_ERR3405274_bin.1_CGC27
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate: host glycan/beta-glucan
- Genome ID: ShaoY_2019_ERR3405274_bin.1
- CGC Family ID: CGCFAM_00020
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_2224 | ShaoY_2019_ERR3405274_bin.1_k141_2224_16 | 15584 | 17038 | - | GH1 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2224 | ShaoY_2019_ERR3405274_bin.1_k141_2224_17 | 17061 | 18875 | - | 4.A.1.2.11 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2224 | ShaoY_2019_ERR3405274_bin.1_k141_2224_18 | 19889 | 20815 | - | 2.A.10.1.4 |
| CAZyme | ShaoY_2019_ERR3405274_bin.1_k141_2224 | ShaoY_2019_ERR3405274_bin.1_k141_2224_19 | 20821 | 22275 | - | GH1 |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2224 | ShaoY_2019_ERR3405274_bin.1_k141_2224_20 | 22364 | 24229 | - | 4.A.1.2.11 |
| pfam | ShaoY_2019_ERR3405274_bin.1_k141_2224 | ShaoY_2019_ERR3405274_bin.1_k141_2224_21 | 24403 | 25233 | - | PRD | PRD | CAT_RBD |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405274_bin.1_k141_2224 | ShaoY_2019_ERR3405274_bin.1_k141_2224_22 | 25623 | 26147 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405274_bin.1_k141_2224 | ShaoY_2019_ERR3405274_bin.1_k141_2224_23 | 26268 | 26945 | - | 5.A.1.2.7 |
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2224_16
Type: CAZyme
Location: 15584 - 17038 (-)
Type: CAZyme
Location: 15584 - 17038 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2224_17
Type: TC
Location: 17061 - 18875 (-)
Type: TC
Location: 17061 - 18875 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2224_18
Type: TC
Location: 19889 - 20815 (-)
Type: TC
Location: 19889 - 20815 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2224_19
Type: CAZyme
Location: 20821 - 22275 (-)
Type: CAZyme
Location: 20821 - 22275 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2224_20
Type: TC
Location: 22364 - 24229 (-)
Type: TC
Location: 22364 - 24229 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2224_21
Type: pfam
Location: 24403 - 25233 (-)
Type: pfam
Location: 24403 - 25233 (-)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2224_22
Type:
Location: 25623 - 26147 (+)
Type:
Location: 25623 - 26147 (+)
Gene ID: ShaoY_2019_ERR3405274_bin.1_k141_2224_23
Type: TC
Location: 26268 - 26945 (-)
Type: TC
Location: 26268 - 26945 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp018372555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.